Use store_object_as_json method to store parameters

uclahs-cds · Dec 22, 2023 · 19c00f9 · 19c00f9
1 parent 9489dfe
commit 19c00f9
Showing 1 changed file with 6 additions and 0 deletions.
diff --git a/config/methods.config b/config/methods.config
@@ -4,6 +4,7 @@ includeConfig "${projectDir}/external/pipeline-Nextflow-config/config/bam/bam_pa
 includeConfig "${projectDir}/external/pipeline-Nextflow-config/config/methods/common_methods.config"
 includeConfig "${projectDir}/external/pipeline-Nextflow-config/config/schema/schema.config"
 includeConfig "${projectDir}/external/pipeline-Nextflow-config/config/retry/retry.config"
+includeConfig "${projectDir}/external/pipeline-Nextflow-config/config/store_object_as_json/store_object_as_json.config"
 
 methods {
 
@@ -129,5 +130,10 @@ methods {
         methods.setup_docker_cpus()
         methods.verify_input_deletion()
         methods.set_recal_tables()
+
+        json_extractor.store_object_as_json(
+            params,
+            new File("${params.log_output_dir}/params.json")
+        )
     }
 }