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UCLA Nelson Lab

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  1. nl-rna-seq_wf nl-rna-seq_wf Public

    RNA-seq for rare diseases pipeline using nextflow

    Nextflow

  2. ExpansionHunter ExpansionHunter Public

    Forked from Illumina/ExpansionHunter

    A tool for estimating repeat sizes

    C++

  3. pipeline-align-DNA pipeline-align-DNA Public

    Forked from uclahs-cds/pipeline-align-DNA

    Nextflow pipeline to align paired DNA FASTQs and sort, mark duplicates, and index resulting alignment

    Nextflow

  4. pipeline-recalibrate-BAM pipeline-recalibrate-BAM Public

    Forked from uclahs-cds/pipeline-recalibrate-BAM

    Nextflow pipeline to perform Indel Realignment and Base Quality Score Recalibration

    Nextflow

  5. pipeline-call-gSNP pipeline-call-gSNP Public

    Forked from uclahs-cds/pipeline-call-gSNP

    Nextflow pipeline to call germline short variants using GATK

    Nextflow

  6. pipeline-call-gSV pipeline-call-gSV Public

    Forked from uclahs-cds/pipeline-call-gSV

    Nextflow pipeline to call germline structural variants and copy number variants using DELLY and Manta

    Nextflow

Repositories

Showing 8 of 8 repositories
  • nl-rna-seq_wf Public

    RNA-seq for rare diseases pipeline using nextflow

    uclanelsonlab/nl-rna-seq_wf’s past year of commit activity
    Nextflow 0 MIT 0 3 0 Updated Jan 17, 2025
  • ExpansionHunter Public Forked from Illumina/ExpansionHunter

    A tool for estimating repeat sizes

    uclanelsonlab/ExpansionHunter’s past year of commit activity
    C++ 0 52 0 0 Updated Dec 11, 2024
  • pipeline-call-gSNP Public Forked from uclahs-cds/pipeline-call-gSNP

    Nextflow pipeline to call germline short variants using GATK

    uclanelsonlab/pipeline-call-gSNP’s past year of commit activity
    Nextflow 0 GPL-2.0 1 0 0 Updated Nov 2, 2024
  • samples_archive Public

    Archive with samples data available and doctor information

    uclanelsonlab/samples_archive’s past year of commit activity
    R 0 0 0 0 Updated Oct 21, 2024
  • uclanelsonlab.github.io Public

    Website for Stanley Nelson Laboratory from UCLA at human genetics department

    uclanelsonlab/uclanelsonlab.github.io’s past year of commit activity
    SCSS 0 MIT 0 0 0 Updated Oct 10, 2024
  • pipeline-call-gSV Public Forked from uclahs-cds/pipeline-call-gSV

    Nextflow pipeline to call germline structural variants and copy number variants using DELLY and Manta

    uclanelsonlab/pipeline-call-gSV’s past year of commit activity
    Nextflow 0 GPL-2.0 1 0 0 Updated May 21, 2024
  • pipeline-align-DNA Public Forked from uclahs-cds/pipeline-align-DNA

    Nextflow pipeline to align paired DNA FASTQs and sort, mark duplicates, and index resulting alignment

    uclanelsonlab/pipeline-align-DNA’s past year of commit activity
    Nextflow 0 GPL-2.0 1 0 0 Updated May 21, 2024
  • pipeline-recalibrate-BAM Public Forked from uclahs-cds/pipeline-recalibrate-BAM

    Nextflow pipeline to perform Indel Realignment and Base Quality Score Recalibration

    uclanelsonlab/pipeline-recalibrate-BAM’s past year of commit activity
    Nextflow 0 GPL-2.0 1 0 0 Updated May 21, 2024

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