nftest.yml

---
global:
  temp_dir: ./test/work
  nf_config: test/global.config
  remove_temp: false
  clean_logs: true

cases:
  - name: a_mini_n2-spark
    message: test development branch with a-mini-n2 and Spark's mark duplicates
    nf_script: ./main.nf
    nf_config: ./test/a_mini_n2-spark.config
    skip: false
    verbose: true
  - name: a_mini_n2-picard
    message: test development branch with a-mini-n2 and Picard's mark duplicates
    nf_script: ./main.nf
    nf_config: ./test/a_mini_n2-picard.config
    skip: false
    verbose: true
  - name: a_mini_n2-picard_yaml
    message: test development branch with a-mini-n2 and Picard's mark duplicates with a YAML config file
    nf_script: ./main.nf
    nf_config: ./test/a_mini_n2-picard_yaml.config
    params_file: ./test/a_mini_n2-picard_yaml.yaml
    skip: false
    verbose: true