Combination PR for ozone diagnostics, metadata intent bugfixes, sfcsub.F landmask bugfix, and canopy resistance output

physics/CONV/Grell_Freitas/cu_gf_deep.F90

@@ -316,7 +316,7 @@ subroutine cu_gf_deep_run(        &
      real(kind=kind_phys), dimension (its:ite,kts:kte) :: pwdper, massflx
      integer :: nv
 !$acc declare create(chem,chem_cup,chem_up,chem_down,dellac,dellac2,chem_c,chem_pw,chem_pwd,   &
-!$acc                         chem_pwav,chem_psum,pwdper,massflux)
+!$acc                         chem_pwav,chem_psum,pwdper,massflx)
 
      real(kind=kind_phys),    dimension (its:ite,kts:kte) ::            &
         entr_rate_2d,mentrd_rate_2d,he,hes,qes,z, heo,heso,qeso,zo,     &                    

physics/GWD/gwdps.meta

@@ -373,7 +373,7 @@
   dimensions = (horizontal_loop_extent)
   type = real
   kind = kind_phys
-  intent = out
+  intent = inout
 [ldiag_ugwp]
   standard_name = flag_for_unified_gravity_wave_physics_diagnostics
   long_name = flag for CIRES UGWP Diagnostics

physics/Interstitials/UFS_SCM_NEPTUNE/GFS_DCNV_generic_pre.meta

@@ -126,7 +126,7 @@
   dimensions = (horizontal_loop_extent,vertical_layer_dimension,number_of_tracers)
   type = real
   kind = kind_phys
-  intent = in
+  intent = inout
 [dtidx]
   standard_name = cumulative_change_of_state_variables_outer_index
   long_name = index of state-variable and process in last dimension of diagnostic tendencies array AKA cumulative_change_index

physics/Interstitials/UFS_SCM_NEPTUNE/GFS_MP_generic_post.F90

@@ -27,7 +27,7 @@ subroutine GFS_MP_generic_post_run(
         totprcp, totice, totsnw, totgrp, cnvprcpb, totprcpb, toticeb, totsnwb, totgrpb, rain_cpl, rainc_cpl, snow_cpl,    &
         pwat, frzr, frzrb, frozr, frozrb, tsnowp, tsnowpb, rhonewsn1, exticeden,                                          & 
         drain_cpl, dsnow_cpl, lsm, lsm_ruc, lsm_noahmp, raincprv, rainncprv, iceprv, snowprv,                             &
-        graupelprv, draincprv, drainncprv, diceprv, dsnowprv, dgraupelprv, dtp, dfi_radar_max_intervals,                  &
+        graupelprv, draincprv, drainncprv, diceprv, dsnowprv, dgraupelprv, dtp,                                           &
         dtend, dtidx, index_of_temperature, index_of_process_mp,ldiag3d, qdiag3d,dqdt_qmicro, lssav, num_dfi_radar,       &
         fh_dfi_radar,index_of_process_dfi_radar, ix_dfi_radar, dfi_radar_tten, radar_tten_limits, fhour, prevsq,      &
         iopt_lake, iopt_lake_clm, lkm, use_lake_model, errmsg, errflg)
@@ -43,10 +43,9 @@ subroutine GFS_MP_generic_post_run(
       integer, intent(in) :: index_of_temperature,index_of_process_mp,use_lake_model(:)
       integer, intent(in) :: imfshalcnv,imfshalcnv_gf,imfdeepcnv,imfdeepcnv_gf,imfdeepcnv_samf
       integer, dimension (:), intent(in) :: htop
-      integer                                                :: dfi_radar_max_intervals
       real(kind=kind_phys),                    intent(in)    :: fh_dfi_radar(:), fhour, con_t0c
       real(kind=kind_phys),                    intent(in)    :: radar_tten_limits(:)
-      integer                                                :: ix_dfi_radar(:)
+      integer,                                 intent(in)    :: ix_dfi_radar(:)
       real(kind=kind_phys), dimension(:,:),    intent(inout) :: gt0,refl_10cm
 
       real(kind=kind_phys),                    intent(in)    :: dtf, frain, con_g, rainmin, rhowater

physics/Interstitials/UFS_SCM_NEPTUNE/GFS_MP_generic_post.meta

@@ -430,7 +430,7 @@
   dimensions = (horizontal_loop_extent,vertical_layer_dimension,number_of_tracers)
   type = real
   kind = kind_phys
-  intent = inout
+  intent = in
 [rain0]
   standard_name = lwe_thickness_of_explicit_rain_amount
   long_name = explicit rain on physics timestep
@@ -772,13 +772,6 @@
   type = real
   kind = kind_phys
   intent = in
-[dfi_radar_max_intervals]
-  standard_name = maximum_number_of_radar_derived_temperature_or_convection_suppression_intervals
-  long_name = maximum allowed number of time ranges with radar-derived microphysics temperature tendencies or radar-derived convection suppression
-  units = count
-  dimensions = ()
-  type = integer
-  intent = in
 [num_dfi_radar]
   standard_name = number_of_radar_derived_temperature_or_convection_suppression_intervals
   long_name = number of time ranges with radar-derived microphysics temperature tendencies or radar-derived convection suppression

physics/Interstitials/UFS_SCM_NEPTUNE/GFS_surface_composites_post.F90

@@ -41,7 +41,7 @@ subroutine GFS_surface_composites_post_run (
       logical,                              intent(in) :: cplflx, frac_grid, cplwav2atm, frac_ice
       logical,                              intent(in) :: lheatstrg
       logical, dimension(:),                intent(in) :: flag_cice, dry, icy
-      logical, dimension(:),             intent(inout) :: wet
+      logical, dimension(:),                intent(in) :: wet
       integer, dimension(:),                intent(in) :: islmsk, use_lake_model
       real(kind=kind_phys), dimension(:),   intent(in) :: wind, t1, q1, prsl1, landfrac, lakefrac, oceanfrac,                   &
         cd_wat, cd_lnd, cd_ice, cdq_wat, cdq_lnd, cdq_ice, rb_wat, rb_lnd, rb_ice, stress_wat,                                  &

physics/Interstitials/UFS_SCM_NEPTUNE/sfcsub.F

@@ -7670,7 +7670,7 @@ subroutine clima(lugb,iy,im,id,ih,fh,len,lsoil,slmskl,slmskw,     &
                   ! points.  so for efficiency, don't have fixrdc try to
                   ! find a value at landice points as defined by the vet type (vet).
               allocate(slmask_noice(len))
-              slmask_noice = 1.0
+              slmask_noice = slmskl
               do i = 1, len
                 if (nint(vet(i)) < 1 .or.
      &              nint(vet(i)) == landice_cat) then

physics/PBL/MYNN_EDMF/mynnedmf_wrapper.F90

@@ -172,7 +172,7 @@ SUBROUTINE mynnedmf_wrapper_run(        &
      implicit none
 !------------------------------------------------------------------- 
 
-     real(kind_phys)               :: huge
+     real(kind_phys),  intent(in)  :: huge
      character(len=*), intent(out) :: errmsg
      integer, intent(out)          :: errflg
 
@@ -290,7 +290,7 @@ SUBROUTINE mynnedmf_wrapper_run(        &
       real(kind_phys), dimension(:), intent(inout) :: frp
       logical, intent(in) :: mix_chem, enh_mix, rrfs_sd
       real(kind_phys), dimension(:,:,:), intent(inout) :: chem3d
-      real(kind_phys), dimension(:,:  ), intent(inout) :: vdep
+      real(kind_phys), dimension(:,:  ), intent(in) :: vdep
       real(kind_phys), dimension(im)   :: emis_ant_no
 
 !MYNN-2D

physics/PBL/SATMEDMF/satmedmfvdif.meta

@@ -503,7 +503,7 @@
   dimensions = (horizontal_loop_extent,vertical_layer_dimension,cumulative_change_of_state_variables_outer_index_max)
   type = real
   kind = kind_phys
-  intent = in
+  intent = inout
 [dtidx]
   standard_name = cumulative_change_of_state_variables_outer_index
   long_name = index of state-variable and process in last dimension of diagnostic tendencies array AKA cumulative_change_index

physics/PBL/SATMEDMF/satmedmfvdifq.meta

@@ -625,7 +625,7 @@
   dimensions = (horizontal_loop_extent,vertical_layer_dimension,cumulative_change_of_state_variables_outer_index_max)
   type = real
   kind = kind_phys
-  intent = in
+  intent = inout
 [dtidx]
   standard_name = cumulative_change_of_state_variables_outer_index
   long_name = index of state-variable and process in last dimension of diagnostic tendencies array AKA cumulative_change_index

physics/PBL/SHOC/moninshoc.meta

@@ -456,7 +456,7 @@
   dimensions = (horizontal_loop_extent,vertical_layer_dimension,cumulative_change_of_state_variables_outer_index_max)
   type = real
   kind = kind_phys
-  intent = in
+  intent = inout
 [dtidx]
   standard_name = cumulative_change_of_state_variables_outer_index
   long_name = index of state-variable and process in last dimension of diagnostic tendencies array AKA cumulative_change_index

physics/PBL/YSU/ysuvdif.meta

@@ -466,7 +466,7 @@
   dimensions = (horizontal_loop_extent,vertical_layer_dimension,cumulative_change_of_state_variables_outer_index_max)
   type = real
   kind = kind_phys
-  intent = in
+  intent = inout
 [dtidx]
   standard_name = cumulative_change_of_state_variables_outer_index
   long_name = index of state-variable and process in last dimension of diagnostic tendencies array AKA cumulative_change_index

physics/SFC_Layer/UFS/sfc_diag.meta

@@ -218,7 +218,7 @@
   dimensions = (horizontal_loop_extent)
   type = real
   kind = kind_phys
-  intent = inout
+  intent = in
 [tskin]
   standard_name = surface_skin_temperature
   long_name = surface skin temperature
@@ -314,7 +314,7 @@
   long_name = model 2m diagnostics use the temperature and humidity calculated by the lake model
   units = flag
   dimensions = ()
-  type = integer
+  type = logical
   intent = in
 [wind]
   standard_name = wind_speed_at_lowest_model_layer

physics/SFC_Layer/UFS/sfc_diag_post.F90

@@ -28,7 +28,7 @@ subroutine sfc_diag_post_run (im, lsm, lsm_noahmp, opt_diag, dry, lssav, dtf, co
         logical             , dimension(:),  intent(in) :: dry
         real(kind=kind_phys), dimension(:),  intent(in) :: pgr, u10m, v10m
         real(kind=kind_phys), dimension(:),  intent(inout) :: t2m, q2m, tmpmin, tmpmax, spfhmin, spfhmax
-        real(kind=kind_phys), dimension(:),  intent(inout) :: t2mmp, q2mp
+        real(kind=kind_phys), dimension(:),  intent(in)    :: t2mmp, q2mp
         real(kind=kind_phys), dimension(:),  intent(inout) :: wind10mmax, u10mmax, v10mmax, dpt2m
 
         character(len=*),                     intent(out) :: errmsg

physics/SFC_Layer/UFS/sfc_diag_post.meta

@@ -96,15 +96,15 @@
   dimensions = (horizontal_loop_extent)
   type = real
   kind = kind_phys
-  intent = out
+  intent = in
 [q2mp]
   standard_name = specific_humidity_at_2m_from_noahmp
   long_name = 2 meter specific humidity from noahmp
   units = kg kg-1
   dimensions = (horizontal_loop_extent)
   type = real
   kind = kind_phys
-  intent = out
+  intent = in
 [t2m]
   standard_name = air_temperature_at_2m
   long_name = 2 meter temperature

physics/SFC_Models/Land/Noahmp/module_sf_noahmplsm.F90

@@ -2013,6 +2013,8 @@ subroutine energy (parameters,ice    ,vegtyp ,ist    ,nsnow  ,nsoil  , & !in
     chuc      = 0.
     chv2      = 0.
     rb        = 0.
+    laisun    = 0.
+    laisha    = 0.
 
     cdmnv     = 0.0
     ezpdv     = 0.0
@@ -2263,7 +2265,8 @@ subroutine energy (parameters,ice    ,vegtyp ,ist    ,nsnow  ,nsoil  , & !in
                     csigmaf1,                                     & !out
 !jref:start
                     qc      ,qsfc    ,psfc    , & !in
-                    q2v     ,chv2, chleaf, chuc)               !inout 
+                    q2v     ,chv2    ,chleaf  ,chuc    ,          &
+                    rb)                                             !out 
 
 ! new coupling code
 
@@ -3712,7 +3715,8 @@ subroutine vege_flux(parameters,nsnow   ,nsoil   ,isnow   ,vegtyp  ,veg     , &
                        t2mv    ,psnsun  ,psnsha  ,canhs   ,          & !out
                        csigmaf1,                                     & !out
                        qc      ,qsfc    ,psfc    ,                   & !in
-                       q2v     ,cah2    ,chleaf  ,chuc    )            !inout 
+                       q2v     ,cah2    ,chleaf  ,chuc    ,          & !inout
+                       rb)                                             !out      
 
 ! --------------------------------------------------------------------------------------------------
 ! use newton-raphson iteration to solve for vegetation (tv) and
@@ -3836,6 +3840,7 @@ subroutine vege_flux(parameters,nsnow   ,nsoil   ,isnow   ,vegtyp  ,veg     , &
   real (kind=kind_phys),                           intent(out) :: chuc   !< under canopy exchange coefficient
   real (kind=kind_phys),                           intent(out) :: canhs  !< canopy heat storage change (w/m2)
   real (kind=kind_phys),                           intent(out) :: q2v    !< 
+  real (kind=kind_phys),                           intent(out) :: rb     !< bulk leaf boundary layer resistance (s/m)
   real (kind=kind_phys) :: cah     !< sensible heat conductance, canopy air to zlvl air (m/s)
   real (kind=kind_phys) :: u10v    !< 10 m wind speed in eastward dir (m/s) 
   real (kind=kind_phys) :: v10v    !< 10 m wind speed in eastward dir (m/s) 
@@ -3852,7 +3857,6 @@ subroutine vege_flux(parameters,nsnow   ,nsoil   ,isnow   ,vegtyp  ,veg     , &
   real (kind=kind_phys) :: z0mo        !roughness length for intermediate output only (m)
   real (kind=kind_phys) :: z0h          !roughness length, sensible heat (m)
   real (kind=kind_phys) :: z0hg         !roughness length, sensible heat (m)
-  real (kind=kind_phys) :: rb           !bulk leaf boundary layer resistance (s/m)
   real (kind=kind_phys) :: ramc         !aerodynamic resistance for momentum (s/m)
   real (kind=kind_phys) :: rahc         !aerodynamic resistance for sensible heat (s/m)
   real (kind=kind_phys) :: rawc         !aerodynamic resistance for water vapor (s/m)

physics/SFC_Models/Land/Noahmp/noahmpdrv.F90

@@ -157,7 +157,7 @@ subroutine noahmpdrv_run                                       &
       sncovr1, qsurf, gflux, drain, evap, hflx, ep, runoff,      &
       cmm, chh, evbs, evcw, sbsno, pah, ecan, etran, edir, snowc,&
       stm, snohf,smcwlt2, smcref2, wet1, t2mmp, q2mp,zvfun,      &
-      ztmax, errmsg, errflg,                                     &
+      ztmax, rca, errmsg, errflg,                                &
       canopy_heat_storage_ccpp,                                  &
       rainfall_ccpp,                                             &
       sw_absorbed_total_ccpp,                                    &
@@ -400,6 +400,8 @@ subroutine noahmpdrv_run                                       &
   real(kind=kind_phys), dimension(:)     , intent(out)   :: q2mp       ! combined q2m from tiles
   real(kind=kind_phys), dimension(:)     , intent(out)   :: zvfun      ! 
   real(kind=kind_phys), dimension(:)     , intent(out)   :: ztmax      ! thermal roughness length
+  real(kind=kind_phys), dimension(:)     , intent(out)   :: rca        ! total canopy/stomatal resistance (s/m)
+
   character(len=*)    ,                    intent(out)   :: errmsg
   integer             ,                    intent(out)   :: errflg
 
@@ -623,7 +625,7 @@ subroutine noahmpdrv_run                                       &
   real (kind=kind_phys)                            :: canopy_heat_storage   !   out | within-canopy heat [W/m2]
   real (kind=kind_phys)                            :: spec_humid_sfc_veg    !   out | surface specific humidty over vegetation [kg/kg]
   real (kind=kind_phys)                            :: spec_humid_sfc_bare   !   out | surface specific humidty over bare soil [kg/kg]
-
+  
   real (kind=kind_phys)                            :: ustarx                !  inout |surface friction velocity
   real (kind=kind_phys)                            :: prslkix               !  in exner function
   real (kind=kind_phys)                            :: prsik1x               !  in exner function
@@ -948,6 +950,10 @@ subroutine noahmpdrv_run                                       &
         ch_vegetated           = 0.0
         ch_bare_ground         = ch_noahmp
         canopy_heat_storage    = 0.0
+        lai_sunlit             = 0.0
+        lai_shaded             = 0.0
+        rs_sunlit              = 0.0
+        rs_shaded              = 0.0
 
       else  ! not glacier
 
@@ -1056,7 +1062,17 @@ subroutine noahmpdrv_run                                       &
       chxy      (i)   = ch_noahmp
       zorl      (i)   = z0_total * 100.0  ! convert to cm
       ztmax     (i)   = z0h_total 
-
+
+      !LAI-scale canopy resistance based on weighted sunlit shaded fraction
+      if(rs_sunlit .le. 0.0 .or. rs_shaded .le. 0.0 .or. &
+          lai_sunlit .eq. 0.0 .or. lai_shaded .eq. 0.0) then
+        rca(i) = parameters%rsmax
+      else !calculate LAI-scale canopy conductance (1/Rs)
+        rca(i) = ((1.0/(rs_sunlit+leaf_air_resistance)*lai_sunlit) + &
+                 ((1.0/(rs_shaded+leaf_air_resistance))*lai_shaded))
+        rca(i) = max((1.0/rca(i)),parameters%rsmin) !resistance
+      end if
+
       smc       (i,:) = soil_moisture_vol
       slc       (i,:) = soil_liquid_vol
       snowxy    (i)   = float(snow_levels)

physics/SFC_Models/Land/Noahmp/noahmpdrv.meta

@@ -1360,6 +1360,14 @@
   type = real
   kind = kind_phys
   intent = out
+[rca]
+  standard_name = aerodynamic_resistance_in_canopy
+  long_name = canopy resistance
+  units = s m-1
+  dimensions = (horizontal_loop_extent)
+  type = real
+  kind = kind_phys
+  intent = out
 [errmsg]
   standard_name = ccpp_error_message
   long_name = error message for error handling in CCPP

physics/photochem/module_ozphys.F90

@@ -306,8 +306,8 @@ subroutine run_o3prog_2015(this, con_1ovg, dt, p, t, dp, ozpl, oz, do_diag, do3_
 
        ! Diagnostics (optional)
        if (do_diag) then
-          do3_dt_prd(:,iLev)  = (prod(:,1)-prod(:,2)*prod(:,6))*dt
-          do3_dt_ozmx(:,iLev) = (oz(:,iLev) - ozib(:))
+          do3_dt_prd(:,iLev)  = prod(:,1) * dt
+          do3_dt_ozmx(:,iLev) = prod(:,2) * (oz(:,iLev) - prod(:,6)) * dt
           do3_dt_temp(:,iLev) = prod(:,3)*(t(:,iLev)-prod(:,5))*dt
           do3_dt_ohoz(:,iLev) = prod(:,4) * (colo3(:,iLev)-coloz(:,iLev))*dt
        endif