Code

Add writers for xdr and ascii files#40

Code

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vnmabus merged 124 commits intovnmabus:developvnmabus/rdata:developfrom trossi:add-writerstrossi/rdata:add-writersCopy head branch name to clipboardJun 20, 2024

+1,213-3

Commits

Commits on Jan 26, 2024

• Add xdr and ascii writers

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• Assert that there is no unexpected value

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• Include non-zero gp value in representation

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• Add initial Python to R converter

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• Simplify string ndarray handling

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• Add converter for dict

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• Add converter for matrices

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• Add function for building r lists

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• Convert tuple to list

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• Use consistent function naming

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• Convert arrays of any dimensionality

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• Add converter for basic types

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• Add compression

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• Use functions instead of a class

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• Add docstrings

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• Add Python-to-R converter functions

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• Add docstring

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• Rename write_all() to write_r_data()

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• Fix flake8 errors

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• Update docstrings

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• Fix ruff

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Commits on Feb 27, 2024

• Add support for RDA files (in addition to RDS)

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Commits on Feb 29, 2024

• Add initial test for writing

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• Write RDA magic with other magic

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• Avoid temporary files in test

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• Include test for ascii files

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• Do not include trailing .0 for doubles

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• Loop over all test files

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• Mark not-implemented features xfail

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• Fix testing Windows-generated ascii files

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• Fix altreps

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• Fix writing NA string

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• Include filenames in pytest output

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• Add debugging output

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• Remove redundant writer functions

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• Enable expression type

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• Enable builtin type

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• Fix empty (None) string

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• Add test for conversion

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• Add option to change version information

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• Fix rda files

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• Set gp flag as plain int

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• Use tuple

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• Fix extra info in version 2 format

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• Skip altreps

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• Generalize list builder

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• Use same encoding as in input

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• Skip ambiguous tests

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Commits on Mar 1, 2024

• Add support for R expression and language

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• Add equality operator for comparing numpy arrays

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• Skip more ambiguous test files

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• Print also python data for debugging

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• Remove unused variable

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Commits on Mar 4, 2024

• Compare string presentations too

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• Allow debug printing in tests

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• Fix ruff

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• Check that integers are small enough

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• Fix mypy

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• Add missing parameters to docstring

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• Use RDS by default

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• Simplify loops

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• Fix typos

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Commits on Mar 26, 2024

• Remove debug prints from tests

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Commits on Mar 27, 2024

• Add test for writing files with compression

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• Use binary mode for writing ascii files

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• Fix mypy

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Commits on Apr 15, 2024

• Do not open temporary file twice

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Commits on May 6, 2024

• Add high-level writer functions

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• Rename format to file_format

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• Use high-level interface

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• Add test for bad RDA creation

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• Add tests for bad encodings

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• Include testing None values

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• Improve error messages

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• Raise NotImplementedError on untested code

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• Remove unused function

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• Add test for writing too large integers

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• Raise error instead of warning for unwritten tag

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• Exclude type checking blocks from coverage report

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• Update authors

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Commits on May 16, 2024

• Rename writer files to unparser

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• Rename writing to unparsing

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• Add unparse_data() function returning bytes

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• Fix function names in docstring

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Commits on Jun 4, 2024

• Use Literal type for file format

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• Use Literal type for compression

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• Use None for no compression

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• Use Literal type for file type

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• Simplify handling RDA magic

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Commits on Jun 5, 2024

• Simplify handling RDA vs RDS difference

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• Simplify type names

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• Add test for unparsing bad rda

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Commits on Jun 6, 2024

• Simplify handling version integers in write

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• Use hex representation for R versions

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• Use callback protocol for type hint

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• Fix docstring style

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• Fix mypy in Python 3.12

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• Fix mypy

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• Fix mypy

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• Remove unnecessary casting

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• Add test file for empty list

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• Add test file for empty named list

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• Fix parsing file format

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• Fix converting empty dict

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• Use file type parser function

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• Clarify variable names

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• Add tests for parsing empty lists

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• Allow only non-empty data

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• Add test for failing to create empty RDA file

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• Fix style

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• Include received type in the error message

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• Clarify the conversion of np.array([None])

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• Simplify no-error context

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• Rewrite file checker with existing functions

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• Fix mypy

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• Clarify compression handling

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• Add test for parsing NaN and Inf

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• Fix comparing NaN values

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• Fix writing NaN and Inf

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• Fix formatting alignment

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• Simplify packing bits

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Commits on Jun 17, 2024

• Fix error message

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• Use Literal type and lower case for encodings

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• Fix integer range check in NumPy 2.0

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