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explain a bit better -Y/--skip-prefix
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[skip ci]
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AndreaGuarracino committed Jul 17, 2022
1 parent 7ce4071 commit 5cb99aa
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion src/yeet/include/parse_args.hpp
Original file line number Diff line number Diff line change
Expand Up @@ -72,7 +72,7 @@ void parse_args(int argc,
args::ValueFlag<uint32_t> num_mappings_for_segments(parser, "N", "number of mappings to retain for each segment [default: 1]", {'n', "num-mappings-for-segment"});
args::ValueFlag<uint32_t> num_mappings_for_short_seq(parser, "N", "number of mappings to retain for each sequence shorter than segment length [default: 1]", {'S', "num-mappings-for-short-seq"});
args::Flag skip_self(parser, "", "skip self mappings when the query and target name is the same (for all-vs-all mode)", {'X', "skip-self"});
args::ValueFlag<char> skip_prefix(parser, "C", "skip mappings when the query and target have the same prefix before the given character C", {'Y', "skip-prefix"});
args::ValueFlag<char> skip_prefix(parser, "C", "skip mappings when the query and target have the same prefix before the last occurrence of the given character C", {'Y', "skip-prefix"});
args::Flag approx_mapping(parser, "approx-map", "skip base-level alignment, producing an approximate mapping in PAF", {'m',"approx-map"});
args::Flag no_merge(parser, "no-merge", "don't merge consecutive segment-level mappings", {'M', "no-merge"});

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