Skip to content

wfmash 0.9.1 - Mutamento
Compare
Choose a tag to compare
@ekg ekg released this 03 Jul 08:52
v0.9.1
e969972

Buildable Source Tarball: wfmash-v0.9.1.tar.gz

Major changes in this release are an improvement of mapping merging and updates to the base level alignment code which allow for exact patching of large gaps in the alignment traceback.

Fixes and updates:

  • signed 32-bit overflow on large plant chromosomes
  • avoid overfiltering due to equal scores on multiple targets
  • mapping min-hash sparsification (hash mapping struct and keep hashes below a threshold) to sample from very large all-vs-all alignment problems
  • simplify mapping merging and cap the merge distance at the wavefront reduction distance used in wflign
  • reduce wavefronts while following the diagonal, to handle wflign of sequences with very different lengths without alignment failure
  • universal minimizer spaced seeds: ALeS seeds now work with unbiased universal minimizer scheme
  • integration of WFA2-lib and application of biWFA for O(s)-memory patching of large gaps in alignment traceback
Assets 3
Loading