wegene-python-sdk

Python SDK for WeGene

Installation

$ pip install wegene

Usage

Set Access Token

To query data from WeGene, one need a valid OAuth2 access token authorized by the user.

import wegene
wegene.Configuration.o_auth_access_token = '<A Valid Access Token with Proper Scope>'

Get Basic User Info

Use wegene.WeGeneUser().get_user() to get user data

profile_id = ''
try:
    user = wegene.WeGeneUser().get_user()
    print(user.profiles[0].id)
    print(user.profiles[0].format)
    print(user.profiles[0].name)
except Exception as e:
    print(e.response_body)

Get Gene Allele Info

Use wegene.Allele().get_allele(profile_id, locations) to get allele data

try:
    allele = wegene.Allele().get_allele(profile_id, ['rs182549'])
    print(allele)
except Exception as e:
    print(e.response_body)

Get Athletigen

Use wegene.Athletigen().get_athletigen(profile_id, report_id) to get athletigen data

try:
    athletigen = wegene.Athletigen().get_athletigen(profile_id, 1487)
    print(athletigen.caseid)
    print(athletigen.description)
    print(athletigen.rank)
    print(athletigen.genotypes.data[0].rsid)
    print(athletigen.genotypes.data[0].genotype)
except Exception as e:
    print(e.response_body)

Get Skin

Use wegene.Skin().get_skin(profile_id, report_id) to get skin data

try:
    skin = wegene.Skin().get_skin(profile_id, 1522)
    print(skin.caseid)
    print(skin.description)
    print(skin.rank)
    print(skin.genotypes.data[0].rsid)
    print(skin.genotypes.data[0].genotype)
except Exception as e:
    print(e.response_body)

Get Psychology

Use wegene.Psychology().get_psychology(profile_id, report_id) to get psychology data

try:
    psychology = wegene.Psychology().get_psychology(profile_id, 1557)
    print(psychology.caseid)
    print(psychology.description)
    print(psychology.rank)
    print(psychology.genotypes.data[0].rsid)
    print(psychology.genotypes.data[0].genotype)
except Exception as e:
    print(e.response_body)

Get Health Risk

Use wegene.Risk().get_risk(profile_id, report_id) to get health risk data

try:
    risk = wegene.Risk().get_risk(profile_id, 88)
    print(risk.caseid)
    print(risk.description)
    print(risk.risk)
    print(risk.genotypes.data[0].rsid)
except Exception as e:
    print(e.response_body)

Get Metabolism/Traits/Drug/Carrier Report

Use wegene.Health().get_metabolism(profile_id, report_id) to get health metabolism info

Use wegene.Health().get_traits(profile_id, report_id) to get genetic traits info

Use wegene.Health().get_drug(profile_id, report_id) to get drug response info

Use wegene.Health().get_carrier(profile_id, report_id) to get disease carrier info

try:
    carrier = wegene.Health().get_drug(profile_id, 184)
    print(carrier.caseid)
    print(carrier.description)
    print(carrier.genotypes.data[0].rsid)
    for allele in carrier.genotypes.data:
        print(allele.genotype)
        print(allele.tsummary)
except Exception as e:
    print(e.response_body)

Get Ancestry Composition

Use wegene.Ancestry().get_ancestry(profile_id) to get user ancestry composition

try:
    ancestry = wegene.Ancestry().get_ancestry(profile_id)
    print(ancestry.block.chinese_nation)
    print(ancestry.area.han_southern)
except Exception as e:
    print(e.response_body)

Get Haplogroups

Use wegene.Haplogroups().get_haplogroups(profile_id) to get user haplogroups

try:
    haplogroups = wegene.Haplogroups().get_haplogroups(profile_id)
    print(haplogroups.y)
    print(haplogroups.mt)
except Exception as e:
    print(e.response_body)

Get Demographics

Use wegene.Demographics().get_demographics(profile_id) to get user demographics

try:
    demographics = wegene.Demographics().get_demographics(profile_id)
    print(demographics.surname)
    print(demographics.population)
except Exception as e:
    print(e.response_body)

Documentation

• Full WeGene API Document

Credits

• Eddie Wu

Thanks

• The SDK is modified on top of the code auto-generated using APIMATIC. Huge thanks to the team as this is a real life saver!!

License

(The MIT License)

Copyright (c) 2016 Eddie Wu

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.