Update pylint config to ignore specific directories

- Removed git ls-files
- Added tests, ro-crate-metadata, create_ro_crate.py, upload_crate.py to be ignored by pylint. Moved these to pylintrc
- create_ro_crate.py, upload_crate.py  are ignored due to rocrate package depending on older version of urllib3, and knowledge graph project depends on newer version.

.github/workflows/lint-and-test.yaml

@@ -26,7 +26,7 @@ jobs:
         poetry install --all-extras -vv
     - name: Analysing the code with pylint
       run: |
-        poetry run pylint --errors-only $(git ls-files '*.py') --ignore=tests/SPARQL,ro-crate-metadata --ignore-patterns=workflowhub_graph/create_ro_crate.py
+        poetry run pylint -v --errors-only .
     - name: Testing the code with pytest
       run: |
         poetry run py.test tests --ignore=tests/SPARQL --ignore=ro-crate-metadata --ignore=workflowhub_graph/create_ro_crate.py

.pylintrc

@@ -36,7 +36,8 @@ fail-under = 10
 # from-stdin =
 
 # Files or directories to be skipped. They should be base names, not paths.
-ignore = ["CVS"]
+ignore = CVS, tests, ro-crate-metadata, create_ro_crate.py, upload_crate.py
+
 
 # Add files or directories matching the regular expressions patterns to the
 # ignore-list. The regex matches against paths and can be in Posix or Windows
@@ -47,7 +48,7 @@ ignore = ["CVS"]
 # Files or directories matching the regular expression patterns are skipped. The
 # regex matches against base names, not paths. The default value ignores Emacs
 # file locks
-ignore-patterns = ["^\\.#"]
+ignore-patterns = ^\\.#,
 
 # List of module names for which member attributes should not be checked and will
 # not be imported (useful for modules/projects where namespaces are manipulated
@@ -83,7 +84,7 @@ persistent = true
 
 # Minimum Python version to use for version dependent checks. Will default to the
 # version used to run pylint.
-py-version = 3.10
+py-version = 3.11
 
 # Discover python modules and packages in the file system subtree.
 # recursive =