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V1.8 pre#25

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tdkaliki wants to merge 7 commits intowtsi-hgi:v1.8_prewtsi-hgi/yascp:v1.8_prefrom tdkaliki:v1.8_pretdkaliki/yascp:v1.8_preCopy head branch name to clipboard

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Commits on Nov 20, 2024

• Merge pull request #2 from wtsi-hgi/v1.8_pre

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  tdkaliki

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Commits on Nov 21, 2024

• The folder merged_h5ad has been moved to the handover folder, and the folder doublets has been renamed to doublet_detection

  

  Vladimir Ovchinnikov

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• The folders celltype and clustering have been renamed to celltype_assignemt and clustering_and_integration respectively

  

  Vladimir Ovchinnikov

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Commits on Nov 26, 2024

• The plots folder has been moved to clustering_and_integration. transfer_data.py has been modified to correctly transfer results into handover/Summary_plots properly

  

  Vladimir Ovchinnikov

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Commits on Nov 28, 2024

• changes in doublet_detection folder

  

  Vladimir Ovchinnikov

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Commits on Nov 29, 2024

• one change in gather_minimal_dataset.py

  

  Vladimir Ovchinnikov

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Commits on Dec 2, 2024

• The deconvolution folder doesn't have existing_cellsnp anymore. New changes are required to remove existing_cellsnp only if it has a readme.md

  

  Vladimir Ovchinnikov

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