Multiplexed imaging mass cytometry reveals distinct tumor-immune microenvironments linked to immunotherapy responses in melanoma
This github repo is for reproducing results in the paper: ["Multiplexed imaging mass cytometry reveals distinct tumor-immune microenvironments linked to immunotherapy responses in melanoma"]
Three main analyses include:
- Single-cell segmentation was performed by Dice-XMBD
- IMC images protein quantification was performed by IMCell-XMBD
- Downstream analysis
Data required for generating results have been deposited at figshare website.