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Releases: ydLiu-HIT/deSALT

deSALT-v1.5.6

20 Aug 05:47
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Fix some bugs in Annotation_Load.py and aln_2pass.c for the use of annotation by deSALT.

deSALT-v1.5.5

19 Jun 05:44
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  1. Fix the bug of "uint32_t" out of bound.
  2. The problem of the reference genome and annotation not matched.

deSALT-v1.5.4

17 May 13:07
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Add XS:A: tag for issue #29

deSALT-v1.5.3

21 Apr 05:19
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New release:

  1. improve the speed of deSALT by 15-20%
  2. fix bugs pushed by users recently (#25 #19 #27 #17 #16 #20 etc.)

deSALT-v1.5.2

05 Jan 12:42
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Bugfix: zero-length operation #16

deSALT-v1.5.1

29 Nov 10:27
264ab46
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  1. Address bugs in Annotation_Load.py(#9, #10 )

  2. Make deSALT's usage more readability (refer to 'Command and options' in README)

deSALT-v1.5

10 Oct 14:30
81d9529
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!!! Important for users.

I have changed some parameters according to the revised manuscript, changes as following:

  1. --index-kmer: from -K to -k
  2. --seeding-kmer: from -k to -l
  3. --max-readlen: from -l to -L

Users should pay attention to the use of new parameters!!!

deSALT-v1.4

21 Sep 11:25
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Change the method for annotation module.

deSALT-v1.3

21 Sep 11:23
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Make some changes for high-quality reads (e.g. Iso-seq) to improve the accuracy.

deSALT-v1.2

21 Sep 11:20
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Changes to deSALT:

Add an option '-T' to force deSALT to detect splicing junction sites in forward transcript strand only for Iso-seq, direct RNA-seq.