Fix pre-commit

requirements-deepcell-mac-arm64_tf210.txt

@@ -1,27 +1,27 @@
-# Protobuf version override needed because
-# the older packages have older compiled protobufs…
-protobuf<3.20
-
-tensorflow-macos==2.10.0
-tensorflow-metal==0.6.0
+cellpose==3.0.8
 
 # Things we need dependencies for
 # smart_open[gcs]
 
 # DeepCell requirements
 deepcell-toolbox>=0.12.1
 deepcell-tracking~=0.6.5
-scipy>=1.2.3,<2
-scikit-image>=0.19.3
 # scikit-learn>=0.20.4
 # tensorflow_addons~=0.16.1
 # spektral~=1.0.4
 jupyterlab
-matplotlib
 
 # added for basic SPACEc functionality
 leidenalg
 louvain
-spektral
+matplotlib
+# Protobuf version override needed because
+# the older packages have older compiled protobufs…
+protobuf<3.20
 pydot==1.4.2
-cellpose==3.0.8
+scikit-image>=0.19.3
+scipy>=1.2.3,<2
+spektral
+
+tensorflow-macos==2.10.0
+tensorflow-metal==0.6.0

requirements-deepcell-mac-arm64_tf28.txt

@@ -1,27 +1,27 @@
-# Protobuf version override needed because
-# the older packages have older compiled protobufs…
-protobuf==3.20.3
-
-tensorflow-macos==2.8.0
-tensorflow-metal==0.4.0
+cellpose==3.0.8
 
 # Things we need dependencies for
 # smart_open[gcs]
 
 # DeepCell requirements
 deepcell-toolbox>=0.12.1
 deepcell-tracking~=0.6.5
-scipy>=1.2.3,<2
-scikit-image>=0.19.3
 # scikit-learn>=0.20.4
 # tensorflow_addons~=0.16.1
 # spektral~=1.0.4
 jupyterlab
-matplotlib
 
 # added for basic SPACEc functionality
 leidenalg
 louvain
-spektral
+matplotlib
+# Protobuf version override needed because
+# the older packages have older compiled protobufs…
+protobuf==3.20.3
 pydot==1.4.2
-cellpose==3.0.8
+scikit-image>=0.19.3
+scipy>=1.2.3,<2
+spektral
+
+tensorflow-macos==2.8.0
+tensorflow-metal==0.4.0

tests/test_6_patch_proximity_analysis.py

@@ -124,7 +124,7 @@ def test_6_patch_proximity_analysis():
         subset_column="condition",
         subset_condition="tonsil",
         title="Tonsil patch proximity analysis",
-        savefig=None
+        savefig=None,
     )