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New Elution Buffer fields in Arnold twist #570

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merged 2 commits into from
Dec 18, 2024
Merged

New Elution Buffer fields in Arnold twist #570

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6e6b00e
new elution buffer udfs in arnold twist
idalindegaard Dec 17, 2024
7c220d4
minimal fix
idalindegaard Dec 17, 2024
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1 change: 1 addition & 0 deletions cg_lims/models/arnold/prep/twist/aliquot_samples_for_enzymatic_fragmentation_twist.py
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Expand Up @@ -23,6 +23,7 @@ class ProcessUDFs(BaseModel):
lot_nr_h2o_aliquot_samples_fragmentation: Optional[str] = Field(
None, alias="Nuclease free water"
)
lot_nr_elution_buffer_aliquot_samples_fragmentation: Optional[str] = Field(None, alias="Lot no: Elution Buffer")


class ArtifactUDFs(BaseModel):
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1 change: 1 addition & 0 deletions cg_lims/models/arnold/prep/twist/bead_purification_twist.py
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Expand Up @@ -14,6 +14,7 @@ class ArtifactUDFs(BaseModel):
class ProcessUDFs(BaseModel):
lot_nr_etoh_bead_purification_post_hyb: Optional[str] = Field(None, alias="Ethanol")
lot_nr_h2o_bead_purification_post_hyb: Optional[str] = Field(None, alias="Nuclease free water")
lot_nr_elution_buffer_bead_purification_post_hyb: Optional[str] = Field(None, alias="Lot no: Elution Buffer")
bead_purification_post_hyb_method: Optional[str] = Field(None, alias="Method document")
binding_and_purification_beads: Optional[str] = Field(
None, alias="Twist Binding and Purification beads"
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6 changes: 6 additions & 0 deletions cg_lims/models/arnold/prep/twist/buffer_exchange.py
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Expand Up @@ -10,8 +10,13 @@ class ArtifactUDFs(BaseModel):
concentration: Optional[float] = Field(None, alias="Concentration")


class ProcessUDFs(BaseModel):
lot_nr_elution_buffer_bex: Optional[str] = Field(None, alias="Lot no: Elution Buffer")


class ArnoldStep(BaseStep):
artifact_udfs: ArtifactUDFs
process_udfs: ProcessUDFs

class Config:
allow_population_by_field_name = True
Expand All @@ -31,6 +36,7 @@ def get_buffer_exchange_twist(lims: Lims, sample_id: str, prep_id: str) -> Optio
return ArnoldStep(
**analyte.base_fields(),
artifact_udfs=ArtifactUDFs(**analyte.artifact_udfs()),
process_udfs=ProcessUDFs(**analyte.process_udfs()),
sample_id=sample_id,
prep_id=prep_id,
step_type="buffer_exchange",
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