refactor: refactor the export to terra configuration (#891)

explorer/app/components/Export/components/BatchCorrectionWarning/batchCorrectionWarning.tsx

@@ -0,0 +1,19 @@
+import { TagWarning } from "@clevercanary/data-explorer-ui/lib/components/common/Tag/tag.styles";
+import {
+  Link,
+  LinkProps,
+} from "@clevercanary/data-explorer-ui/lib/components/Links/components/Link/link";
+import React from "react";
+
+export const BatchCorrectionWarning = ({
+  label,
+  url,
+}: LinkProps): JSX.Element => {
+  return (
+    <p>
+      <TagWarning>Please note</TagWarning> Data normalization and batch
+      correction may differ between projects and processing methods. For details
+      see <Link label={label} url={url} />.
+    </p>
+  );
+};

explorer/app/components/index.tsx

@@ -1,4 +1,5 @@
 export { Alert } from "@clevercanary/data-explorer-ui/lib/components/common/Alert/alert";
+export { FluidAlert } from "@clevercanary/data-explorer-ui/lib/components/common/Alert/alert.styles";
 export { ButtonGroup } from "@clevercanary/data-explorer-ui/lib/components/common/ButtonGroup/buttonGroup";
 export {
   ContentCopyIconSmall,
@@ -24,12 +25,13 @@ export { TagWarning } from "@clevercanary/data-explorer-ui/lib/components/common
 export { DetailViewTable } from "@clevercanary/data-explorer-ui/lib/components/Detail/components/DetailViewTable/detailViewTable";
 export { DownloadCurlCommandForm } from "@clevercanary/data-explorer-ui/lib/components/Export/components/DownloadCurlCommand/components/DownloadCurlCommandForm/downloadCurlCommandForm";
 export { DownloadCurlCommand } from "@clevercanary/data-explorer-ui/lib/components/Export/components/DownloadCurlCommand/downloadCurlCommand";
-export { ExportEntityToTerra } from "@clevercanary/data-explorer-ui/lib/components/Export/components/ExportEntityToTerra/exportEntityToTerra";
 export { ExportMethod } from "@clevercanary/data-explorer-ui/lib/components/Export/components/ExportMethod/exportMethod";
 export { ExportSelectedData } from "@clevercanary/data-explorer-ui/lib/components/Export/components/ExportSelectedData/exportSelectedData";
 export { ExportCurrentQuery } from "@clevercanary/data-explorer-ui/lib/components/Export/components/ExportSummary/components/ExportCurrentQuery/exportCurrentQuery";
 export { ExportSelectedDataSummary } from "@clevercanary/data-explorer-ui/lib/components/Export/components/ExportSummary/components/ExportSelectedDataSummary/exportSelectedDataSummary";
 export { ExportSummary } from "@clevercanary/data-explorer-ui/lib/components/Export/components/ExportSummary/exportSummary";
+export { ExportToTerraForm } from "@clevercanary/data-explorer-ui/lib/components/Export/components/ExportToTerra/components/ExportToTerraForm/exportToTerraForm";
+export { ExportToTerra } from "@clevercanary/data-explorer-ui/lib/components/Export/components/ExportToTerra/exportToTerra";
 export { AzulFileDownload } from "@clevercanary/data-explorer-ui/lib/components/Index/components/AzulFileDownload/azulFileDownload";
 export { Cell } from "@clevercanary/data-explorer-ui/lib/components/Index/components/Cell/cell";
 export { Summaries } from "@clevercanary/data-explorer-ui/lib/components/Index/components/Hero/components/Summaries/summaries";
@@ -54,7 +56,6 @@ export { MdxMarkdown } from "./common/MDXMarkdown/mdxMarkdown";
 export { ConsentCodeList } from "./Detail/components/ConsentCodeList/consentCodeList";
 export { ConsentTooltip } from "./Detail/components/ConsentTooltip/consentTooltip";
 export { ConsortiumOverview } from "./Detail/components/Consortium/ConsortiumOverview/consortiumOverview";
-export { ExportEntityToTerraForm } from "./Detail/components/Export/components/ExportEntityToTerraForm/exportEntityToTerraForm";
 export { FileLocationArchivePreview } from "./Detail/components/GeneratedMatricesTables/components/FileLocationArchivePreview/fileLocationArchivePreview";
 export { FileLocationCopy } from "./Detail/components/GeneratedMatricesTables/components/FileLocationCopy/fileLocationCopy";
 export { FileLocationDownload } from "./Detail/components/GeneratedMatricesTables/components/FileLocationDownload/fileLocationDownload";

explorer/app/content/anvil-cmg/index.tsx

@@ -1,6 +1,6 @@
 export { RenderComponent } from "@clevercanary/data-explorer-ui/lib/components/ComponentCreator/components/RenderComponent/renderComponent";
 export { Section } from "../../components/common/MDXMarkdown/components/Section/mdxSection.styles";
-export { default as ExportToTerra } from "../common/exportToTerra.mdx";
+export { default as ExportToTerraStart } from "../common/exportToTerraStart.mdx";
 export { default as ExportToTerraSuccess } from "../common/exportToTerraSuccess.mdx";
 export { default as DataReleasePolicy } from "./dataReleasePolicy.mdx";
 export { default as LoginTermsOfService } from "./loginTermsOfService.mdx";

explorer/app/content/hca-dcp/downloadCurlCommandSuccess.mdx

@@ -0,0 +1,12 @@
+import { BatchCorrectionWarning } from "../../components/Export/components/BatchCorrectionWarning/batchCorrectionWarning";
+
+### Your curl Command is Ready
+
+Execute the curl command below in your terminal to download the selected data.
+
+<BatchCorrectionWarning
+  label={"Matrix Normalization and Batch Correction"}
+  url={
+    "https://data.humancellatlas.org/guides/consumer-vignettes/matrices#matrix-normalization-and-batch-correction"
+  }
+/>

explorer/app/content/hca-dcp/exportToTerraStart.mdx

@@ -0,0 +1,10 @@
+import { BatchCorrectionWarning } from "../../components/Export/components/BatchCorrectionWarning/batchCorrectionWarning";
+
+### Export To Terra
+
+<BatchCorrectionWarning
+  label={"Matrix Normalization and Batch Correction"}
+  url={
+    "https://data.humancellatlas.org/guides/consumer-vignettes/matrices#matrix-normalization-and-batch-correction"
+  }
+/>

explorer/app/content/hca-dcp/exportToTerraSuccessWithWarning.mdx

@@ -0,0 +1,12 @@
+import { BatchCorrectionWarning } from "../../components/Export/components/BatchCorrectionWarning/batchCorrectionWarning";
+
+### Your Terra Workspace Link is Ready
+
+Your Terra Workspace has been opened in a new browser tab. The workspace URL is referenced below.
+
+<BatchCorrectionWarning
+  label={"Matrix Normalization and Batch Correction"}
+  url={
+    "https://data.humancellatlas.org/guides/consumer-vignettes/matrices#matrix-normalization-and-batch-correction"
+  }
+/>

explorer/app/content/hca-dcp/index.tsx

@@ -3,12 +3,14 @@ export {
   Section,
   SectionActions,
 } from "../../components/common/MDXMarkdown/components/Section/mdxSection.styles";
-export { default as ExportToTerra } from "../common/exportToTerra.mdx";
+export { default as ExportToTerra } from "../common/exportToTerraStart.mdx";
 export { default as ExportToTerraSuccess } from "../common/exportToTerraSuccess.mdx";
 export { default as BatchCorrectionWarning } from "./batchCorrectionWarning.mdx";
 export { default as ContributorGeneratedMatrices } from "./contributorGeneratedMatrices.mdx";
 export { default as DataReleasePolicy } from "./dataReleasePolicy.mdx";
 export { default as DCPGeneratedMatrices } from "./dcpGeneratedMatrices.mdx";
-export { default as DownloadEntityCurlCommandStart } from "./downloadEntityCurlCommandStart.mdx";
-export { default as DownloadEntityCurlCommandSuccess } from "./downloadEntityCurlCommandSuccess.mdx";
+export { default as DownloadCurlCommandStart } from "./downloadCurlCommandStart.mdx";
+export { default as DownloadCurlCommandSuccess } from "./downloadCurlCommandSuccess.mdx";
+export { default as ExportToTerraStart } from "./exportToTerraStart.mdx";
+export { default as ExportToTerraSuccessWithWarning } from "./exportToTerraSuccessWithWarning.mdx";
 export { default as MatrixQuestionnaire } from "./matrixQuestionnaire.mdx";