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25 Open 190 Closed
25 Open 190 Closed
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Issues list

Param/input file parsing mistakes in currently public benchmarking runs bug Something isn't working DDA quantification - precursor ions DIA quantification - peptidoform/precursor ion to be discussed a decision still needs to be made
#560 opened Jan 27, 2025 by rodvrees
@rodvrees
2
Fix parsing param MSAngel tolerances
#558 opened Jan 27, 2025 by mlocardpaulet
@mlocardpaulet
Update Contributing documentation
#557 opened Jan 26, 2025 by enryH
@enryH
Don't fail silently
#556 opened Jan 26, 2025 by enryH
1 task
Hide or reduce submission comment text
#555 opened Jan 26, 2025 by RobbinBouwmeester
Files saved on server later
#554 opened Jan 26, 2025 by RobbinBouwmeester
Location, location, location; disentangle configurations of everything later
#553 opened Jan 26, 2025 by RobbinBouwmeester
Result json repository
#548 opened Jan 24, 2025 by RobbinBouwmeester
@wolski @enryH
@paretje @mlocardpaulet @RobbinBouwmeester @RalfG
4
Fixed modifications are implicit, not explicitly reported by MaxQuant
#545 opened Jan 22, 2025 by rodvrees
display the percentage of missing values for quantification results later
#537 opened Jan 17, 2025 by OlivierLangella
1
UnboundLocalError when un-highlighting a submitted datapoint in thje diapasef ion quant module
#532 opened Jan 16, 2025 by rodvrees
@RobbinBouwmeester
1
File extensions seem to get changed during data upload and storage on server later
#531 opened Jan 16, 2025 by Cajac102
1
make form for parameter description in public upload
#527 opened Jan 10, 2025 by mlocardpaulet
@wolski @enryH
@RobbinBouwmeester @SamvPy
6
prot. Nter mod. not parsed for Alphapept
#508 opened Dec 17, 2024 by mlocardpaulet
@enryH @mlocardpaulet @Cajac102
8
To explore: parameter methionine excision during search
#504 opened Dec 16, 2024 by mlocardpaulet
2
support Proteome Discoverer for DDA modules DDA quantification - peptidoforms later
#474 opened Dec 4, 2024 by mlocardpaulet
2 of 4 tasks
@mlocardpaulet
8
add header description in the fasta file used for the mixed species modules. DDA quantification - peptidoforms DDA quantification - precursor ions DIA quantification - peptidoform/precursor ion
#463 opened Nov 29, 2024 by mlocardpaulet
@mlocardpaulet
1
Make previous results available for in depth view enhancement New feature or request later
#458 opened Nov 28, 2024 by JuliaS92
Improve documentation of project structure to ease onboarding of new contributors
#457 opened Nov 28, 2024 by JuliaS92
1
make documentation for Spetronaut DDA quantification - precursor ions
#453 opened Nov 26, 2024 by mlocardpaulet
@wolski
Replace mass shifts in peptide proforma strings during FragPipe and Sage parsing with modification names
#444 opened Nov 21, 2024 by Cajac102
1
@RobbinBouwmeester @Cajac102
6
When Datapoint is generated, stored information is always DDA params, even in DIA module
#434 opened Nov 7, 2024 by rodvrees
@wolski
4
Add support for standardized formats enhancement New feature or request later
#388 opened Sep 5, 2024 by Cajac102
@rodvrees
1
write checklist for datapoint public submission approval to be discussed a decision still needs to be made
#385 opened Sep 5, 2024 by mlocardpaulet
@RalfG
1
What needs to be done for the manuscript manuscript
#349 opened Aug 30, 2024 by mlocardpaulet
3 of 18 tasks
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