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LP Fix#138

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ckmah merged 13 commits intomasterYeoLab/bento-tools:masterfrom lp-fixYeoLab/bento-tools:lp-fixCopy head branch name to clipboardAug 20, 2024

+317-206

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Commits on Jun 12, 2024

• lp_diff_discrete() fix

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• test_lp.py update

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Commits on Jul 2, 2024

• Add no significant patterns warning to lp()

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• Move ValueError for lp_diff_discrete()

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• test_lp_diff_discrete_small_data comment

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• Change raise error to warning

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Commits on Jul 4, 2024

• pyproject.toml pin dask version

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• Merge branch 'master' into lp-fix

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Commits on Aug 20, 2024

• dask compatibility

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• sd multitable support

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• Fix lp_diff_discrete to handle missing patterns and invalid phenotypes

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• update devcontainer.json to use Python 3.11 variant and install RYE

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• ignore deprecation pandas 2.2 include_groups for now

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