v2.0.0.

v2.0.0 - [05/11/24]

• Significant recoding of pipeline to bring it more in line with current nf-core template.
• Add Krona to produce graphical outputs of Bracken results. Path to Krona Taxonomy file will have to be specified with --kronadb.
• Update FastQC from version 0.11.9 to version 0.12.1.
• Update fastp from version 0.23.2 to version 0.23.4.
• Update Kraken 2 from version 2.1.2 to version 2.1.3.
• Update Bracken from version 2.7 to version 2.9.
• Update MultiQC from version 1.13 to version 1.25.1. Report now includes Bracken outputs and Kraken 2 outputs.

v1.2.1

Specify python3 in check_samplesheet.py so will run on Cambridge HPC

v1.2

v1.2 - [31/01/24]

• Remove --brackendb parameter as redundant. Bracken will now use the database location specified with --krakendb.
• Documentation updated.

v1.1

v1.1 - [16/03/23]

• Fix check_samplesheet.py bug
• Various other fixes

v1.0

v1.0 - [15/11/22]

• Initial release of avantonder/bacQC, created with the nf-core template.