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@avantonder avantonder released this 06 Nov 15:47
v2.0.0
7dcc740
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v2.0.0 - [05/11/24]

  • Significant recoding of pipeline to bring it more in line with current nf-core template.
  • Add Krona to produce graphical outputs of Bracken results. Path to Krona Taxonomy file will have to be specified with --kronadb.
  • Update FastQC from version 0.11.9 to version 0.12.1.
  • Update fastp from version 0.23.2 to version 0.23.4.
  • Update Kraken 2 from version 2.1.2 to version 2.1.3.
  • Update Bracken from version 2.7 to version 2.9.
  • Update MultiQC from version 1.13 to version 1.25.1. Report now includes Bracken outputs and Kraken 2 outputs.
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