Fix scheduled inputs

[averissimo]

Part of insightsengineering/nestdevs-tasks#98

extra-deps was badly formed

[averissimo]

There's still an error with min-cohort strategy, but it seems like a caching issue. It might go away without any action.

I've already tried removing the action's cache and there was no change. I'm testing it locally.

[github-actions]

Unit Tests Summary

  1 files   29 suites   26s ⏱️
367 tests 367 ✅ 0 💤 0 ❌
819 runs  819 ✅ 0 💤 0 ❌

Results for commit ef9cbf3.

♻️ This comment has been updated with latest results.

[github-actions]

Unit Test Performance Difference

Test Suite	$Status$	Time on main	$±Time$	$±Tests$	$±Skipped$	$±Failures$	$±Errors$
FilteredData	💔	$9.75$	$+1.85$	$0$	$0$	$0$	$0$

Additional test case details

Test Suite	$Status$	Time on main	$±Time$	Test Case
FilteredData	💔	$0.90$	$+1.22$	srv_active_clicking_remove_all_button_clears_filters

Results for commit ab22008

♻️ This comment has been updated with latest results.

[m7pr]

Rerunning Scheduled for revdepcheck and dependency test

• https://github.com/insightsengineering/teal.slice/actions/runs/12746093481
• https://github.com/insightsengineering/teal.slice/actions/runs/12746089860

[m7pr]

min_cohort still filing due to

Error : ! Could not solve package dependencies:
* deps::/tmp/RtmpBgzJAD/filec0a3043ed:
  * Can't install dependency SummarizedExperiment
  * Can't install dependency bioc::SummarizedExperiment
* SummarizedExperiment: Can't install dependency MatrixGenerics (>= 1.1.3)
* MatrixGenerics: Can't install dependency matrixStats (>= 1.4.1)
* bioc::SummarizedExperiment: Can't install dependency MatrixGenerics (>= 1.1.3)
── Create lockfile... ──────────────────────────────────────────────────────────
Error : ! Could not solve package dependencies:
* deps::/tmp/RtmpBgzJAD/filec0a3043ed:
  * Can't install dependency SummarizedExperiment
  * Can't install dependency bioc::SummarizedExperiment
* SummarizedExperiment: Can't install dependency MatrixGenerics (>= 1.1.3)
* MatrixGenerics: Can't install dependency matrixStats (>= 1.4.1)
* bioc::SummarizedExperiment: Can't install dependency MatrixGenerics (>= 1.1.3)

[m7pr]

I needed to specify versions of bioc packages as the job actually installed very old packages. Now with the versions specified, the new job is satisfied for all strategies besides release (teal.logger is not yet released).

https://github.com/insightsengineering/teal.slice/actions/runs/12784156379/job/35636608638

I will try to remove bioc::MatrixGenerics from Config/Needs/verdepcheck from DESCRIPTION file, as this was added through this PR but might not be 100% needed. However, this is ready for the review

[llrs-roche]

The matrix changes make sense and the versions requested are current released versions of packages. Not sure why bioc::MatrixGenerics was initially needed, but I think it is better to leave it out