PATO v.1.0.6

Fixed an issue with the new Apple processors

PATO v.1.0.5

• Added 'dist' objetct to accnet class. Now you can pre compute the distance matrix in accnet objects to improve the performace in functions such as knnn, similarity_tree or similarity_network among othres.

PATO v.1.0.4

PATO new version 1.0.4

• added new BacMet database.
• added "threshold" parameter to function knnn.
• update MMseqs MacOS version.
• fix some errors.

PATO v1.0.2

PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species. It allows to analyze the core-genome, accessory genome and whole genome, the population structure, and the horizontal gene transfer dynamics. PATO uses, as core software, MASH , MMSeq2, Minimap2 and R.