v1.0.0

New features

• tree command for generating hierarchical clustering trees from distance matrices.

General

• Preferred extensions for genome database files and signatures files have been changed from .db and .h5 to .gdb and .gs.

Performance improvements

• Use process-based parallelism by default for parsing multiple sequence files (much faster).
• Speed up gambit dist with -s option applied.

CLI

• Strip directory and extension from input file IDs. This applies to CSV output for querying distance calculation and IDs in generated signature files.
• -k and --prefix parameters now default to values used RefSeq database.
• Add option to specify number of cores to use.
• Add option to disable progress bar printing.