GitHub - jyw-atgithub/SV-evaluation: simulation and bench marking

Name		Name	Last commit message	Last commit date
Latest commit History 24 Commits
old_simit		old_simit
.Rhistory		.Rhistory
10-1_sample_assembly.sh		10-1_sample_assembly.sh
10-2_badread_profile.sh		10-2_badread_profile.sh
11_visor_haplotype.sh		11_visor_haplotype.sh
12_visor_reads.sh		12_visor_reads.sh
21_qctrim.sh		21_qctrim.sh
22_read_mapping.sh		22_read_mapping.sh
23_cuteSV.sh		23_cuteSV.sh
24_SVIM.sh		24_SVIM.sh
25_sniffles.sh		25_sniffles.sh
26_sort_and_filter.sh		26_sort_and_filter.sh
27_intra_merge.sh		27_intra_merge.sh
31_benchmark.sh		31_benchmark.sh
32_grepscore.sh		32_grepscore.sh
41_flye.sh		41_flye.sh
42_nextDenovo.sh		42_nextDenovo.sh
45_scaffolding.sh		45_scaffolding.sh
51_SVIMasm.sh		51_SVIMasm.sh
52_MumandCo.sh		52_MumandCo.sh
53_svmu.sh		53_svmu.sh
54_syri.sh		54_syri.sh
55_asm-sort_and_filter.sh		55_asm-sort_and_filter.sh
56_asm-intra_merge.sh		56_asm-intra_merge.sh
Rplot.png		Rplot.png
Rplot01.png		Rplot01.png
Rplot02.png		Rplot02.png
Rplot03.png		Rplot03.png
Rplot04.png		Rplot04.png
Rplot05.png		Rplot05.png
Rplot06.png		Rplot06.png
Rplot07.png		Rplot07.png
fp_fn.txt		fp_fn.txt
r11_flye.sh		r11_flye.sh
r12_hifiasm.sh		r12_hifiasm.sh
r21_completeness.sh		r21_completeness.sh
r22_collect_score.sh		r22_collect_score.sh
r31_extending.sh		r31_extending.sh
real-sequences-note.md		real-sequences-note.md
score_line.R		score_line.R