big lint fix #735
johnooohtest.yml
on: pull_request
Matrix: nf-test
Matrix: nf-core-lint
Matrix: pytest
Matrix: verify-markdown-file
confirm-pass
0s
Annotations
136 errors and 3 warnings
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nf-test (genomenexus/annotationpipeline, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (genomenexus/annotationpipeline, singularity)
The operation was canceled.
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nf-test (rediscoverte, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (pvmaf/concat, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (pvmaf/concat, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (rediscoverte, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (genomenexus/vcf2maf, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (genomenexus/vcf2maf, singularity)
The operation was canceled.
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nf-test (neoantigenediting/aligntoiedb, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (gbcms, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (gbcms, singularity)
The operation was canceled.
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nf-test (mutect1, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (neoantigenediting/aligntoiedb, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (neoantigenediting/computefitness, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (neoantigenediting/computefitness, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (neoantigenutils/convertannotjson, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (neoantigenutils/convertannotjson, conda)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (neoantigenutils/formatnetmhcpan, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (neoantigenutils/convertannotjson, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (neoantigenutils/generatehlastring, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (neoantigenutils/formatnetmhcpan, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (neoantigenutils/generatemutfasta, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (neoantigenutils/generatehlastring, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (neoantigenutils/neoantigeninput, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (neoantigenutils/generatemutfasta, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (neoantigenutils/neoantigeninput, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (neosv, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (neosv, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (netmhcpan, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (netmhcpan, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (netmhcstabpan, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (phylowgs/createinput, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (netmhcstabpan, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (phylowgs/parsecnvs, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (phylowgs/createinput, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (phylowgs/multievolve, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (phylowgs/writeresults, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (phylowgs/parsecnvs, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (phylowgs/multievolve, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (phylowgs/writeresults, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (polysolver, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (ppflagfixer, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (polysolver, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (ppflagfixer, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (custom/splitfastqbylane)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (facets)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (gatk4/applybqsr)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (genomenexus/vcf2maf)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (genotypevariants/all)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (genomenexus/annotationpipeline)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (neoantigenediting/computefitness)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (mutect1)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (neoantigenediting/aligntoiedb)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (neoantigenutils/formatnetmhcpan)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (neoantigenutils/neoantigeninput)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (neoantigenutils/generatemutfasta)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (neoantigenutils/convertannotjson)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (neoantigenutils/generatehlastring)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (neosv)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (gbcms)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (netmhcpan)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (phylowgs/createinput)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (phylowgs/multievolve)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (phylowgs/writeresults)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (phylowgs/parsecnvs)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (netmhcstabpan)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (ppflagfixer)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (pvmaf/concat)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (polysolver)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (rediscoverte)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (salmon/quant)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (salmon/index)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-core-lint (snppileup)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (custom/splitfastqbylane)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (gatk4/applybqsr)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (facets)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (gbcms)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (genotypevariants/all)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (genomenexus/vcf2maf)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (genomenexus/annotationpipeline)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (mutect1)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (neoantigenediting/aligntoiedb)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (neoantigenediting/computefitness)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (neoantigenutils/convertannotjson)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (custom/splitfastqbylane, conda)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (custom/splitfastqbylane, conda)
The operation was canceled.
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nf-test (gatk4/applybqsr, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (gatk4/applybqsr, singularity)
The operation was canceled.
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nf-test (salmon/index, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (salmon/quant, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (salmon/index, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (salmon/quant, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (snppileup, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (snppileup, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (neoantigenutils/formatnetmhcpan)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (neoantigenutils/generatehlastring)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (neoantigenutils/neoantigeninput)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (neoantigenutils/generatemutfasta)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (netmhcpan)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (phylowgs/createinput)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (phylowgs/multievolve)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (netmhcstabpan)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (gatk4/applybqsr, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (gatk4/applybqsr, docker)
The operation was canceled.
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verify-markdown-file (neosv)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (phylowgs/parsecnvs)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (ppflagfixer)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (phylowgs/writeresults)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (polysolver)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (pvmaf/concat)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (salmon/index)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (rediscoverte)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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verify-markdown-file (salmon/quant)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (genotypevariants/all, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (genotypevariants/all, singularity)
The operation was canceled.
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verify-markdown-file (snppileup)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (genomenexus/vcf2maf, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (genomenexus/vcf2maf, docker)
The operation was canceled.
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nf-test (genotypevariants/all, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (genotypevariants/all, docker)
The operation was canceled.
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nf-test (custom/splitfastqbylane, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (custom/splitfastqbylane, singularity)
The operation was canceled.
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nf-test (gbcms, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (gbcms, docker)
The operation was canceled.
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nf-test (facets, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (facets, docker)
The operation was canceled.
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nf-test (mutect1, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (mutect1, docker)
The operation was canceled.
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nf-test (facets, singularity)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (facets, singularity)
The operation was canceled.
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nf-test (gatk4/applybqsr, conda)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (gatk4/applybqsr, conda)
The operation was canceled.
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nf-test (genomenexus/annotationpipeline, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (genomenexus/annotationpipeline, docker)
The operation was canceled.
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nf-test (custom/splitfastqbylane, docker)
Canceling since a higher priority waiting request for 'Run tests-157' exists
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nf-test (custom/splitfastqbylane, docker)
The operation was canceled.
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nf-test-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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pytest-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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pre-commit
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-python@v3, actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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