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big lint fix #735

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big lint fix

big lint fix #735

Run time

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Job Run time
editorconfig
7s
pre-commit
14s
pytest-changes
6s
nf-test-changes
3s
prettier
7s
nf-test (neosv, docker)
1s
nf-test (neosv, singularity)
1s
nf-test (snppileup, docker)
1s
nf-test (snppileup, singularity)
1s
nf-test (neoantigenediting/aligntoiedb, docker)
1s
nf-test (neoantigenediting/aligntoiedb, singularity)
1s
nf-test (neoantigenediting/computefitness, docker)
1s
nf-test (neoantigenediting/computefitness, singularity)
1s
nf-test (neoantigenutils/convertannotjson, docker)
1s
nf-test (neoantigenutils/convertannotjson, singularity)
1s
nf-test (neoantigenutils/convertannotjson, conda)
1s
nf-test (neoantigenutils/neoantigeninput, docker)
1s
nf-test (neoantigenutils/neoantigeninput, singularity)
1s
nf-test (neoantigenutils/generatemutfasta, docker)
1s
nf-test (neoantigenutils/generatemutfasta, singularity)
1s
nf-test (neoantigenutils/formatnetmhcpan, docker)
1s
nf-test (neoantigenutils/formatnetmhcpan, singularity)
1s
nf-test (neoantigenutils/generatehlastring, docker)
1s
nf-test (neoantigenutils/generatehlastring, singularity)
1s
nf-test (netmhcpan, docker)
1s
nf-test (netmhcpan, singularity)
1s
nf-test (salmon/index, docker)
1s
nf-test (salmon/index, singularity)
1s
nf-test (salmon/quant, docker)
1s
nf-test (salmon/quant, singularity)
1s
nf-test (facets, docker)
1m 13s
nf-test (facets, singularity)
1m 13s
nf-test (gatk4/applybqsr, docker)
1m 5s
nf-test (gatk4/applybqsr, singularity)
1m 4s
nf-test (gatk4/applybqsr, conda)
1m 13s
nf-test (genomenexus/annotationpipeline, docker)
1m 12s
nf-test (genomenexus/annotationpipeline, singularity)
1m 1s
nf-test (genomenexus/vcf2maf, docker)
1m 5s
nf-test (genomenexus/vcf2maf, singularity)
57s
nf-test (ppflagfixer, docker)
1s
nf-test (ppflagfixer, singularity)
1s
nf-test (phylowgs/multievolve, docker)
1s
nf-test (phylowgs/multievolve, singularity)
1s
nf-test (phylowgs/createinput, docker)
1s
nf-test (phylowgs/createinput, singularity)
1s
nf-test (phylowgs/parsecnvs, docker)
1s
nf-test (phylowgs/parsecnvs, singularity)
1s
nf-test (phylowgs/writeresults, docker)
1s
nf-test (phylowgs/writeresults, singularity)
1s
nf-test (custom/splitfastqbylane, docker)
1m 14s
nf-test (custom/splitfastqbylane, singularity)
1m 13s
nf-test (custom/splitfastqbylane, conda)
1m 1s
nf-test (polysolver, docker)
1s
nf-test (polysolver, singularity)
1s
nf-test (pvmaf/concat, docker)
1s
nf-test (pvmaf/concat, singularity)
1s
nf-test (rediscoverte, docker)
1s
nf-test (rediscoverte, singularity)
1s
nf-test (gbcms, docker)
1m 10s
nf-test (gbcms, singularity)
1m 1s
nf-test (netmhcstabpan, docker)
1s
nf-test (netmhcstabpan, singularity)
1s
nf-test (genotypevariants/all, docker)
1m 7s
nf-test (genotypevariants/all, singularity)
1m 2s
nf-test (mutect1, docker)
1m 3s
nf-test (mutect1, singularity)
1s
nf-core-lint (neosv)
1s
nf-core-lint (snppileup)
1s
nf-core-lint (neoantigenediting/aligntoiedb)
1s
pytest
0s
nf-core-lint (neoantigenediting/computefitness)
1s
nf-core-lint (neoantigenutils/convertannotjson)
1s
nf-core-lint (neoantigenutils/neoantigeninput)
1s
nf-core-lint (neoantigenutils/generatemutfasta)
1s
nf-core-lint (neoantigenutils/formatnetmhcpan)
1s
verify-markdown-file (neosv)
1s
nf-core-lint (neoantigenutils/generatehlastring)
1s
verify-markdown-file (snppileup)
1s
nf-core-lint (netmhcpan)
1s
verify-markdown-file (neoantigenediting/aligntoiedb)
1s
nf-core-lint (salmon/index)
1s
verify-markdown-file (neoantigenediting/computefitness)
1s
nf-core-lint (salmon/quant)
1s
verify-markdown-file (neoantigenutils/convertannotjson)
1s
nf-core-lint (facets)
1s
verify-markdown-file (neoantigenutils/neoantigeninput)
1s
nf-core-lint (gatk4/applybqsr)
1s
verify-markdown-file (neoantigenutils/generatemutfasta)
1s
nf-core-lint (genomenexus/annotationpipeline)
1s
verify-markdown-file (neoantigenutils/formatnetmhcpan)
1s
nf-core-lint (genomenexus/vcf2maf)
1s
nf-core-lint (ppflagfixer)
1s
verify-markdown-file (neoantigenutils/generatehlastring)
1s
nf-core-lint (phylowgs/multievolve)
1s
verify-markdown-file (netmhcpan)
1s
nf-core-lint (phylowgs/createinput)
1s
verify-markdown-file (salmon/index)
1s
nf-core-lint (phylowgs/parsecnvs)
1s
verify-markdown-file (salmon/quant)
1s
nf-core-lint (phylowgs/writeresults)
1s
verify-markdown-file (facets)
1s
nf-core-lint (custom/splitfastqbylane)
1s
verify-markdown-file (gatk4/applybqsr)
1s
verify-markdown-file (genomenexus/annotationpipeline)
1s
nf-core-lint (polysolver)
1s
verify-markdown-file (genomenexus/vcf2maf)
1s
nf-core-lint (pvmaf/concat)
1s
verify-markdown-file (ppflagfixer)
1s
nf-core-lint (rediscoverte)
1s
verify-markdown-file (phylowgs/multievolve)
1s
nf-core-lint (gbcms)
1s
verify-markdown-file (phylowgs/createinput)
1s
verify-markdown-file (phylowgs/parsecnvs)
1s
nf-core-lint (netmhcstabpan)
1s
verify-markdown-file (phylowgs/writeresults)
1s
nf-core-lint (genotypevariants/all)
1s
verify-markdown-file (custom/splitfastqbylane)
1s
nf-core-lint (mutect1)
1s
verify-markdown-file (polysolver)
1s
verify-markdown-file (pvmaf/concat)
1s
verify-markdown-file (rediscoverte)
1s
verify-markdown-file (gbcms)
1s
verify-markdown-file (netmhcstabpan)
1s
verify-markdown-file (genotypevariants/all)
1s
verify-markdown-file (mutect1)
1s
confirm-pass
1s
21m 14s