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Rough guide to recipes
Neil Cook edited this page Oct 7, 2020
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3 revisions
- preprocessing
- dark master
- bad pixel
- localisation
- shape master
- shape (local)
- flat/blaze
- thermal
- leak master
- wavelength master
- wavelength (local)
- extraction
- leak correction
- make telluric
- fit telluric
- make template
- ccf
- polarimetry
- Note These are not in the required run order. Please do not run them in this order.
- Note this document should be consistent with the main README.md please report any differences (or update)
- Note this document should be consistent with the documentation please report any differences
Cleans file of detector effects.
cal_preprocess_spirou.py [DIRECTORY] [RAW_FILES]
--skip, --debug, --listing, --listingall, --version, --info,
--program, --idebug, --breakpoints, --quiet, --help
DRS_DATA_WORKING \\ default: "tmp" directory
{ODOMETER_CODE}_pp.fits \\ preprocessed files (4096x4096)
None
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Collects all dark files and creates a master dark image to use for correction.
cal_dark_master_spirou.py
--filetype, --database, --plot,
--debug, --listing, --listingall, --version, --info,
--program, --idebug, --breakpoints, --quiet, --help
DRS_DATA_REDUC \\ default: "reduced" directory
DARKM {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
{ODOMETER_CODE}_pp_dark_master.fits \\ dark master file (4096x4096) + FITS-TABLE
None
Does not require a master night choice - finds darks from all preprocessed nights.
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Creates a bad pixel mask for identifying and deal with bad pixels.
cal_badpix_spirou.py [DIRECTORY] -flatfiles [FLAT_FLAT] -darkfiles [DARK_DARK_TEL]
cal_badpix_spirou.py [DIRECTORY] -flatfiles [FLAT_FLAT] -darkfiles [DARK_DARK_INT]
--database, --combine, --flipimage, --fluxunits, --plot, --resize,
--debug, --listing, --listingall, --version, --info,
--program, --idebug, --breakpoints, --quiet, --help
DRS_DATA_REDUC \\ default: "reduced" directory
BADPIX {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
BKGRDMAP {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
{ODOMETER_CODE}_pp_badpixel.fits \\ bad pixel map file (3100x4088)
{ODOMETER_CODE}_pp_bmap.fits \\ background mask file (3100x4088)
DEBUG_{ODOMETER_CODE}_pp_background.fits \\ debug background file (7x3100x4088)
BADPIX_MAP
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Finds the orders on the image.
cal_loc_spirou.py [DIRECTORY] [FLAT_DARK]
cal_loc_spirou.py [DIRECTORY] [DARK_FLAT]
--database, --badpixfile, --badcorr, --backsub, --combine,
--darkfile, --darkcorr, --flipimage, --fluxunits, --plot, --resize,
--debug, --listing, --listingall, --version, --info,
--program, --idebug, --breakpoints, --quiet, --help
DRS_DATA_REDUC \\ default: "reduced" directory
ORDER_PROFILE_{FIBER} {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
LOC_{FIBER} {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
{ODOMETER_CODE}_pp_order_profile_C.fits \\ order profile file (3100x4088)
{ODOMETER_CODE}_pp_loco_C.fits \\ localisation centers map file (49x4088)
{ODOMETER_CODE}_pp_fwhm-order_C.fits \\ localisation widths map file (49x4088)
{ODOMETER_CODE}_pp_with-order_C.fits \\ localisation superposition file (3100x4088)
DEBUG_{ODOMETER_CODE}_pp_background.fits \\ debug background file (7x3100x4088)
LOC_MINMAX_CENTS, LOC_MIN_CENTS_THRES, LOC_FINDING_ORDERS, LOC_IM_SAT_THRES,
LOC_ORD_VS_RMS, LOC_CHECK_COEFFS, LOC_FIT_RESIDUALS
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Creates a master FP image from all FPs processed. Uses this to work out the required shifts due to the FP master image, slicer pupil geometry and the bending of the orders (found in localisation).
cal_shape_master_spirou.py [DIRECTORY] -hcfiles [HCONE_HCONE] -fpfiles [FP_FP]
--database, --badpixfile, --badcorr, --backsub, --combine,
--darkfile, --darkcorr, --flipimage, --fluxunits, --locofile,
--plot, --resize,
--debug, --listing, --listingall, --version, --info,
--program, --idebug, --breakpoints, --quiet, --help
DRS_DATA_REDUC \\ default: "reduced" directory
SHAPEX {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
SHAPEY {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
FPMASTER {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
{ODOMETER_CODE}_pp_shapex.fits \\ dx shape map (3100x4088)
{ODOMETER_CODE}_pp_shapey.fits \\ dy shape map (3100x4088)
{ODOMETER_CODE}_pp_fpmaster.fits \\ fp master file (3100x4088) + FITS-TABLE
DEBUG_{ODOMETER_CODE}_shape_out_bdx.fits \\ dx map before dy map (3100x4088)
DEBUG_{ODOMETER_CODE}_shape_in_fp.fits \\ input fp before shape corr (3100x4088)
DEBUG_{ODOMETER_CODE}_shape_out_fp.fits \\ input fp after shape corr (3100x4088)
DEBUG_{ODOMETER_CODE}_shape_in_hc.fits \\ input hc before shape corr (3100x4088)
DEBUG_{ODOMETER_CODE}_shape_out_hc.fits \\ input hc after shape corr (3100x4088)
DEBUG_{ODOMETER_CODE}_pp_background.fits \\ debug background file (7x3100x4088)
SHAPE_DX, SHAPE_ANGLE_OFFSET_ALL, SHAPE_ANGLE_OFFSET, SHAPE_LINEAR_TPARAMS
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Takes the shape master outputs (shapex, shapey and fpmaster) and applies these transformations to shift the image to the master fp frame, unbend images and shift to correct for slicer pupil geometry.
cal_shape_spirou.py [DIRECTORY] [FP_FP]
--database, --badpixfile, --badcorr, --backsub, --combine,
--darkfile, --darkcorr, --flipimage, --fluxunits, --fpmaster,
--plot, --resize, --shapex, --shapey,
--debug, --listing, --listingall, --version, --info,
--program, --idebug, --breakpoints, --quiet, --help
DRS_DATA_REDUC \\ default: "reduced" directory
SHAPEL {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
{ODOMETER_CODE}_pp_shapel.fits \\ local shape map (3100x4088)
DEBUG_{ODOMETER_CODE}_shape_in_fp.fits \\ input fp before shape corr (3100x4088)
DEBUG_{ODOMETER_CODE}_shape_out_fp.fits \\ input fp after shape corr (3100x4088)
DEBUG_{ODOMETER_CODE}_pp_background.fits \\ debug background file (7x3100x4088)
SHAPE_DX, SHAPE_ANGLE_OFFSET_ALL, SHAPE_ANGLE_OFFSET, SHAPE_LINEAR_TPARAMS
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Extracts out flat images in order to measure the blaze and produced blaze correction and flat correction images.
cal_flat_spirou.py [DIRECTORY] [FLAT_FLAT]
--database, --badpixfile, --badcorr, --backsub, --combine,
--darkfile, --darkcorr, --fiber, --flipimage, --fluxunits,
--locofile, --orderpfile, --plot, --resize,
--shapex, --shapey, --shapel,
--debug, --listing, --listingall, --version, --info,
--program, --idebug, --breakpoints, --quiet, --help
DRS_DATA_REDUC \\ default: "reduced" directory
FLAT_{FIBER} {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
BLAZE_{FIBER} {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
{ODOMETER_CODE}_pp_blaze_{FIBER}.fits \\ blaze correction file (49x4088)
{ODOMETER_CODE}_pp_flat_{FIBER}.fits \\ blaze correction file (49x4088)
DEBUG_{ODOMETER_CODE}_pp_e2dsll_{FIBER}.fits \\ debug pre extract file (7x3100x4088)
DEBUG_{ODOMETER_CODE}_pp_background.fits \\ debug background file (7x3100x4088)
FLAT_ORDER_FIT_EDGES1, FLAT_ORDER_FIT_EDGES2, FLAT_BLAZE_ORDER1,
FLAT_BLAZE_ORDER2
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Extracts dark frames in order to provide correction for the thermal background after extraction of science / calibration frames.
cal_thermal_spirou.py [DIRECTORY] [DARK_DARK_INT]
cal_thermal_spirou.py [DIRECTORY] [DARK_DARK_TEL]
--database, --badpixfile, --badcorr, --backsub, --combine,
--darkfile, --darkcorr, --fiber, --flipimage, --fluxunits,
--locofile, --orderpfile, --plot, --resize,
--shapex, --shapey, --shapel, --wavefile,
--debug, --listing, --listingall, --version, --info,
--program, --idebug, --breakpoints, --quiet, --help
DRS_DATA_REDUC \\ default: "reduced" directory
THERMALT_{FIBER} {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
THERMALI_{FIBER} {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
{ODOMETER_CODE}_pp_e2ds_{FIBER}.fits \\ extracted + flat field file (49x4088)
{ODOMETER_CODE}_pp_e2dsff_{FIBER}.fits \\ extracted + flat field file (49x4088)
{ODOMETER_CODE}_pp_s1d_w_{FIBER}.fits \\ s1d constant in pixel space (FITS-TABLE)
{ODOMETER_CODE}_pp_s1d_v_{FIBER}.fits \\ s1d constant in velocity space (FITS-TABLE)
DEBUG_{ODOMETER_CODE}_pp_e2dsll_{FIBER}.fits \\ debug pre extract file (7x3100x4088)
DEBUG_{ODOMETER_CODE}_pp_background.fits \\ debug background file (7x3100x4088)
{ODOMETER_CODE}_pp_thermal_e2ds_int_{FIBER}.fits \\ extracted thermal for dark_dark_int (49x4088)
{ODOMETER_CODE}_pp_thermal_e2ds_tel_{FIBER}.fits \\ extracted thermal for dark_dark_tel (49x4088)
None
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Extracts all DARK_FP files and creates a model for later leak correction.
cal_leak_master.py [DIRECTORY]
--filetype, --database, --plot
--debug, --listing, --listingall, --version, --info,
--program, --idebug, --breakpoints, --quiet, --help
DRS_DATA_REDUC \\ default: "reduced" directory
WAVE_{FIBER} {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
{ODOMETER_CODE}_pp_e2dsff_{FIBER}.fits \\ extracted + flat field file (49x4088)
{ODOMETER_CODE}_pp_leak_master_{FIBER}.fits \\ leak correction maste rfile (49x4088)
None
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Creates a wavelength solution and measures drifts (via CCF) of the FP relative to the FP master
cal_wave_master_spirou.py [DIRECTORY] -hcfiles [HCONE_HCONE] -fpfiles [FP_FP]
--database, --badpixfile, --badcorr, --backsub, --blazefile,
--combine, --darkfile, --darkcorr, --fiber, --flipimage,
--fluxunits, --locofile, --orderpfile, --plot, --resize,
--shapex, --shapey, --shapel, --wavefile, -hcmode, -fpmode,
--forceext,
--debug, --listing, --listingall, --version, --info,
--program, --idebug, --breakpoints, --quiet, --help
DRS_DATA_REDUC \\ default: "reduced" directory
WAVEM_{FIBER} {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
WAVEHCL_{FIBER} {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
WAVEFPL_{FIBER} {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
{ODOMETER_CODE}_pp_e2ds_{FIBER}.fits \\ extracted + flat field file (49x4088)
{ODOMETER_CODE}_pp_e2dsff_{FIBER}.fits \\ extracted + flat field file (49x4088)
{ODOMETER_CODE}_pp_s1d_w_{FIBER}.fits \\ s1d constant in pixel space (FITS-TABLE)
{ODOMETER_CODE}_pp_s1d_v_{FIBER}.fits \\ s1d constant in velocity space (FITS-TABLE)
DEBUG_{ODOMETER_CODE}_pp_e2dsll_{FIBER}.fits \\ debug pre extract file (7x3100x4088)
DEBUG_{ODOMETER_CODE}_pp_background.fits \\ debug background file (7x3100x4088)
{ODOMETER_CODE}_pp_e2dsff_linelist_{FIBER}.dat \\ wave stats hc line list
{ODOMETER_CODE}_pp_e2dsff_wavemres_{FIBER}.fits \\ wave res table (multi extension fits)
{ODOMETER_CODE}_pp_e2dsff_wavem_hc_{FIBER}.fits \\ wave solution from hc only (49x4088)
{ODOMETER_CODE}_pp_e2dsff_wavem_fp_{FIBER}.fits \\ wave solution from hc + fp (49x4088)
cal_wave_results.tbl \\ wave res table (ASCII-table)
{ODOMETER_CODE}_pp_e2dsff_mhc_lines_{FIBER}.tbl \\ wave hc lines (ASCII-table)
{ODOMETER_CODE}_pp_wavem_hclines_{FIBER}.fits \\ wave hc ref/measured lines table (FITS-TABLE)
{ODOMETER_CODE}_pp_wavem_fplines_{FIBER}.fits \\ wave fp ref/measured lines table (FITS-TABLE)
{ODOMETER_CODE}_pp_e2dsff_ccf_{FIBER}.fits \\ ccf code [FITS-TABLE]
WAVE_HC_GUESS, WAVE_HC_BRIGHTEST_LINES, WAVE_HC_TFIT_GRID, WAVE_HC_RESMAP, WAVE_LITTROW_CHECK1,
WAVE_LITTROW_EXTRAP1, WAVE_LITTROW_CHECK2, WAVE_LITTROW_EXTRAP2, WAVE_FP_FINAL_ORDER,
WAVE_FP_LWID_OFFSET, WAVE_FP_WAVE_RES, WAVE_FP_M_X_RES, WAVE_FP_IPT_CWID_1MHC, WAVE_FP_IPT_CWID_LLHC,
WAVE_FP_LL_DIFF, WAVE_FP_MULTI_ORDER, WAVE_FP_SINGLE_ORDER, CCF_RV_FIT, CCF_RV_FIT_LOOP, WAVEREF_EXPECTED,
EXTRACT_S1D, EXTRACT_S1D_WEIGHT, WAVE_FIBER_COMPARISON, WAVE_FIBER_COMP, WAVENIGHT_ITERPLOT, WAVENIGHT_HISTPLOT
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Calculates corrections to the master wavelength solution as a nightly wavelength solution and measures drifts (via CCF) of the FP relative to the FP master
cal_wave_night_spirou.py [DIRECTORY] -hcfiles [HCONE_HCONE] -fpfiles [FP_FP]
--database, --badpixfile, --badcorr, --backsub, --blazefile,
--combine, --darkfile, --darkcorr, --fiber, --flipimage,
--fluxunits, --locofile, --orderpfile, --plot, --resize,
--shapex, --shapey, --shapel, --wavefile, -hcmode, -fpmode,
--forceext
--debug, --listing, --listingall, --version, --info,
--program, --idebug, --breakpoints, --quiet, --help
DRS_DATA_REDUC \\ default: "reduced" directory
WAVE_{FIBER} {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
{ODOMETER_CODE}_pp_e2ds_{FIBER}.fits \\ extracted + flat field file (49x4088)
{ODOMETER_CODE}_pp_e2dsff_{FIBER}.fits \\ extracted + flat field file (49x4088)
{ODOMETER_CODE}_pp_s1d_w_{FIBER}.fits \\ s1d constant in pixel space (FITS-TABLE)
{ODOMETER_CODE}_pp_s1d_v_{FIBER}.fits \\ s1d constant in velocity space (FITS-TABLE)
DEBUG_{ODOMETER_CODE}_pp_e2dsll_{FIBER}.fits \\ debug pre extract file (7x3100x4088)
DEBUG_{ODOMETER_CODE}_pp_background.fits \\ debug background file (7x3100x4088)
{ODOMETER_CODE}_pp_e2dsff__wave_night_{FIBER}.fits \\ wave night solution (49x4088)
{ODOMETER_CODE}_pp_wavem_hclines_{FIBER}.fits \\ wave hc ref/measured lines table (FITS-TABLE)
{ODOMETER_CODE}_pp_wavem_fplines_{FIBER}.fits \\ wave fp ref/measured lines table (FITS-TABLE)
{ODOMETER_CODE}_pp_e2dsff_ccf_{FIBER}.fits \\ ccf code [FITS-TABLE]
WAVENIGHT_ITERPLOT WAVENIGHT_HISTPLOT WAVEREF_EXPECTED
CCF_RV_FIT CCF_RV_FIT_LOOP EXTRACT_S1D EXTRACT_S1D_WEIGHT
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Extracts any preprocessed image using all the calibrations required.
cal_extract_spirou.py [DIRECTORY] [PP_FILE]
--badpixfile, --badcorr, --backsub, --blazefile,
--combine, --objname, --dprtype, --darkfile, --darkcorr,
--fiber, --flipimage, --fluxunits, --flatfile,
--locofile, --orderpfile, --plot, --resize,
--shapex, --shapey, --shapel, --thermal, --thermalfile, --wavefile,
--debug, --listing, --listingall, --version, --info,
--program, --idebug, --breakpoints, --quiet, --help
DRS_DATA_REDUC \\ default: "reduced" directory
{ODOMETER_CODE}_pp_e2ds_{FIBER}.fits \\ extracted + flat field file (49x4088)
{ODOMETER_CODE}_pp_e2dsff_{FIBER}.fits \\ extracted + flat field file (49x4088)
{ODOMETER_CODE}_pp_s1d_w_{FIBER}.fits \\ s1d constant in pixel space (FITS-TABLE)
{ODOMETER_CODE}_pp_s1d_v_{FIBER}.fits \\ s1d constant in velocity space (FITS-TABLE)
DEBUG_{ODOMETER_CODE}_pp_e2dsll_{FIBER}.fits \\ debug pre extract file (7x3100x4088)
DEBUG_{ODOMETER_CODE}_pp_background.fits \\ debug background file (7x3100x4088)
{ODOMETER_CODE}_pp_ext_fplines_{FIBER} .fits \\ the FP ref/measured lines (FOR OBJ_FP only)
FLAT_ORDER_FIT_EDGES1, FLAT_ORDER_FIT_EDGES2, FLAT_BLAZE_ORDER1,
FLAT_BLAZE_ORDER2, THERMAL_BACKGROUND, EXTRACT_SPECTRAL_ORDER1,
EXTRACT_SPECTRAL_ORDER2, EXTRACT_S1D, EXTRACT_S1D_WEIGHT
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Corrects extracted files for leakage coming from a FP (for OBJ_FP files only)
cal_leak_spirou.py [DIRECTORY] [PP_FILE]
--database, --plot, --leakfile
--debug, --listing, --listingall, --version, --info,
--program, --idebug, --breakpoints, --quiet, --help
DRS_DATA_REDUC \\ default: "reduced" directory
{ODOMETER_CODE}_pp_e2ds_{FIBER}.fits \\ extracted + flat field file (49x4088)
{ODOMETER_CODE}_pp_e2dsff_{FIBER}.fits \\ extracted + flat field file (49x4088)
{ODOMETER_CODE}_pp_s1d_w_{FIBER}.fits \\ s1d constant in pixel space (FITS-TABLE)
{ODOMETER_CODE}_pp_s1d_v_{FIBER}.fits \\ s1d constant in velocity space (FITS-TABLE)
DEBUG_{ODOMETER_CODE}_pp_e2dsll_{FIBER}.fits \\ debug pre extract file (7x3100x4088)
DEBUG_{ODOMETER_CODE}_pp_background.fits \\ debug background file (7x3100x4088)
None
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Takes a hot star and calculates telluric transmission
obj_mk_tellu_spirou.py [DIRECTORY] [E2DS & OBJ_DARK]
obj_mk_tellu_spirou.py [DIRECTORY] [E2DSFF & OBJ_DARK]
obj_mk_tellu_spirou.py [DIRECTORY] [E2DS & OBJ_FP]
obj_mk_tellu_spirou.py [DIRECTORY] [E2DSFF & OBJ_FP]
--database, --blazefile, --plot, --wavefile
--debug, --listing, --listingall, --version, --info,
--program, --idebug, --breakpoints, --quiet, --help
DRS_DATA_REDUC \\ default: "reduced" directory
TELLU_CONV_{FIBER} {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
TELLU_TRANS_{FIBER} {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
{ODOMETER_CODE}_pp_tellu_trans_{FIBER}.fits \\ telluric transmission file (49x4088)
{WAVEFILE}_tellu_conv_{FIBER}.npy \\ tapas convolved with wave file (49x4088)
MKTELLU_WAVE_FLUX1, MKTELLU_WAVE_FLUX2
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Using the telluric tramission calculates principle components (PCA) to correct input images of atmospheric absorption.
obj_fit_tellu_spirou.py [DIRECTORY] [E2DS & OBJ_DARK]
obj_fit_tellu_spirou.py [DIRECTORY] [E2DSFF & OBJ_DARK]
obj_fit_tellu_spirou.py [DIRECTORY] [E2DS & OBJ_FP]
obj_fit_tellu_spirou.py [DIRECTORY] [E2DSFF & OBJ_FP]
--database, --blazefile, --plot, --wavefile
--debug, --listing, --listingall, --version, --info,
--program, --idebug, --breakpoints, --quiet, --help
DRS_DATA_REDUC \\ default: "reduced" directory
TELLU_CONV_{FIBER} {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
TELLU_TRANS_{FIBER} {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
{ODOMETER_CODE}_pp_e2dsff_tcorr_{FIBER}.fits \\ telluric corrected e2dsff file (49x4088)
{ODOMETER_CODE}_pp_s1d_w_tcorr_{FIBER}.fits \\ telluric corrected s1d constant in pixel space (FITS-TABLE)
{ODOMETER_CODE}_pp_s1d_v_tcorr_{FIBER}.fits \\ telluric corrected s1d constant in velocity space (FITS-TABLE)
{ODOMETER_CODE}_pp_e2dsff_recon_{FIBER}.fits \\ reconstructed transmission e2dsff file (49x4088)
{ODOMETER_CODE}_pp_s1d_w_recon_{FIBER}.fits \\ reconstructed transmission s1d constant in pixel space (FITS-TABLE)
{ODOMETER_CODE}_pp_s1d_v_recon_{FIBER}.fits \\ reconstructed transmission s1d constant in velocity space (FITS-TABLE)
EXTRACT_S1D, EXTRACT_S1D_WEIGHT, FTELLU_PCA_COMP1, FTELLU_PCA_COMP2,
FTELLU_RECON_SPLINE1, FTELLU_RECON_SPLINE2, FTELLU_WAVE_SHIFT1,
FTELLU_WAVE_SHIFT2, FTELLU_RECON_ABSO1, FTELLU_RECON_ABSO2
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Uses all telluric corrected images of a certain object name to create and BERV and wavelength corrected template in order to server as a better model SED for telluric correction.
obj_mk_tellu_spirou.py and obj_fit_tellu_spirou.py need to be rerun after
template generation.
obj_mk_template_spirou.py [OBJNAME]
--filetype, -fiber,
--database, --blazefile, --plot, --wavefile
--debug, --listing, --listingall, --version, --info,
--program, --idebug, --breakpoints, --quiet, --help
DRS_DATA_REDUC \\ default: "reduced" directory
TELLU_CONV_{FIBER} {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
TELLU_TRANS_{FIBER} {NIGHT_NAME} {FILENAME} {HUMAN DATE} {UNIX DATE}
Template_{OBJNAME}_{filetype}_{FIBER}.fits \\ Template for object (3100x4088) + FITS TABLE
Template_s1d_{OBJNAME}_sc1d_w_{FIBER}.fits \\ Template s1d constant in pixel space for object FITS TABLE + FITS TABLE
Template_s1d_{OBJNAME}_sc1d_v_{FIBER}.fits \\ Template s1d constant in velocity space for object FITS TABLE + FITS TABLE
BigCube0_{OBJNAME}_{filetype}_{FIBER}.fits \\ Cube of obs making template earth reference (49 x N x 4088)
BigCube_{OBJNAME}_{filetype}_{FIBER}.fits \\ Cube of obs making template star reference (49 x N x 4088)
EXTRACT_S1D
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Cross correlates the input image against a mask and measures a radial velocity per order, and combines to give an over all radial velocity measurement. Also (where possible) takes into account the FP drift measured by a CCF in the wave solution (when wave solution used a FP)
cal_ccf_spirou.py [DIRECTORY] [E2DS & OBJ_FP]
cal_ccf_spirou.py [DIRECTORY] [E2DSFF & OBJ_FP]
cal_ccf_spirou.py [DIRECTORY] [E2DS_CORR & OBJ_FP]
cal_ccf_spirou.py [DIRECTORY] [E2DSFF_CORR & OBJ_FP]
cal_ccf_spirou.py [DIRECTORY] [E2DS & OBJ_DARK]
cal_ccf_spirou.py [DIRECTORY] [E2DSFF & OBJ_DARK]
cal_ccf_spirou.py [DIRECTORY] [E2DS_CORR & OBJ_DARK]
cal_ccf_spirou.py [DIRECTORY] [E2DSFF_CORR & OBJ_DARK]
--mask, --rv, --width, --step
--database, --blazefile, --plot
--debug, --listing, --listingall, --version, --info,
--program, --idebug, --breakpoints, --quiet, --help
DRS_DATA_REDUC \\ default: "reduced" directory
{ODOMETER_CODE}_pp_{INTYPE}_{FIBER}_ccf_{mask}_{FIBER}.fits \\ CCF for science channel file (FITS-TABLE)
{ODOMETER_CODE}_pp_{INTYPE}_{FIBER}_ccf_fp_{FIBER}.fits \\ CCF for reference channel file (FITS-TABLE)
CCF_RV_FIT, CCF_RV_FIT_LOOP, CCF_SWAVE_REF, CCF_PHOTON_UNCERT
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Produces all polarimetry outputs.
pol_spirou.py [DIRECTORY] [E2DSFF]
pol_spirou.py [DIRECTORY] [E2DSFF_CORR]
--blazefile, --plot, --wavefile,
--debug, --listing, --listingall, --version, --info,
--program, --idebug, --breakpoints, --quiet, --help
DRS_DATA_REDUC \\ default: "reduced" directory
{ODOMETER_CODE}_pp_{INTYPE}_pol.fits // polar file
{ODOMETER_CODE}_pp_{INTYPE}_StokesI.fits // stokes file
{ODOMETER_CODE}_pp_{INTYPE}_null1_pol.fits // null 1 file
{ODOMETER_CODE}_pp_{INTYPE}_null2_pol.fits // null 2 file
{ODOMETER_CODE}_pp_{INTYPE}_lsd_pol.fits // lsd file
{ODOMETER_CODE}_pp_{INTYPE}_s1d_w_pol.fits // s1d polar file constant in pixel space for object
{ODOMETER_CODE}_pp_{INTYPE}_s1d_v_pol.fits // s1d polar file constant in velocity space
{ODOMETER_CODE}_pp_{INTYPE}_s1d_w_null1.fits // s1d null 1 file constant in pixel space for object
{ODOMETER_CODE}_pp_{INTYPE}_s1d_v_null1.fits // s1d null 1 file constant in velocity space
{ODOMETER_CODE}_pp_{INTYPE}_s1d_w_null2.fits // s1d null 2 file constant in pixel space for object
{ODOMETER_CODE}_pp_{INTYPE}_s1d_v_null2.fits // s1d null 2 file constant in velocity space
{ODOMETER_CODE}_pp_{INTYPE}_s1d_w_stokesi.fits // s1d stokes file constant in pixel space for object
{ODOMETER_CODE}_pp_{INTYPE}_s1d_v_stokesi.fits // s1d stokes file constant in velocity space
POLAR_CONTINUUM, POLAR_RESULTS, POLAR_STOKES_I, POLAR_LSD,
EXTRACT_S1D, EXTRACT_S1D_WEIGHT
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