Repositories list

• DreamDIA

  Public
  Software for data-independent acquisition (DIA) proteomic data processing with deep representation features.

  Python

  •

  Apache License 2.0

  •4•12•3•0•Updated Jan 21, 2025Jan 21, 2025

• BPformer

  Public
  Tracing the Origins of Unknown Tumors Using Pathway-based Transformer Model

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 9, 2024Dec 9, 2024

• Clever-XMBD

  Public
  Python

  •1•1•0•0•Updated Oct 29, 2024Oct 29, 2024

• Pathmethy

  Public
  Python

  •0•0•0•0•Updated Aug 1, 2024Aug 1, 2024

• multipex_img_visualize

  Public
  Python

  •1•0•0•0•Updated Jul 29, 2024Jul 29, 2024

• IMC-CRLM

  Public
  R

  •0•2•0•0•Updated Jun 6, 2024Jun 6, 2024

• StemCellDet

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 29, 2023Dec 29, 2023

• USAIL-XMBD

  Public
  USAIL: a user-centric, scalable and interactive tool for large-scale single-cell RNA-seq data analysis

  0•0•0•0•Updated Oct 25, 2023Oct 25, 2023

• ims_gene_signature

  Public
  Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma

  Python

  •4•12•1•0•Updated Jun 4, 2023Jun 4, 2023

• scRank-XMBD

  Public
  R

  •0•5•0•0•Updated Mar 23, 2023Mar 23, 2023

• DCTD_Team_Aginome-XMU

  Public
  Team Aginome-XMU submission to DREAM Challenge Tumor Deconvolution

  Python

  •

  MIT License

  •0•2•0•0•Updated Dec 7, 2022Dec 7, 2022

• sparkSTARsolo

  Public
  USAIL_sparkSTARsolo

  C

  •0•1•0•0•Updated Nov 7, 2022Nov 7, 2022

• IDEPA-XMBD

  Public
  IDEPA-XMBD has evaluated five state-of-the-art individual-level DEAs tools through classic computational and functional criteria.

  Python

  •3•2•0•0•Updated Oct 27, 2022Oct 27, 2022

• DAISM-XMBD

  Public
  Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks

  Python

  •

  MIT License

  •2•16•2•0•Updated Jun 2, 2022Jun 2, 2022

• g2p-aggregator

  Public
  Associations of genomic features, drugs and diseases

  HTML

  •11•0•0•0•Updated Jan 21, 2022Jan 21, 2022

• IMC_melanoma

  Public
  R

  •0•0•1•0•Updated Jan 18, 2022Jan 18, 2022

• scSparkPaper

  Public
  TeX

  •1•1•0•0•Updated Nov 13, 2021Nov 13, 2021

• Dice-XMBD

  Public
  Deep learning-based cell segmentation tool for imaging mass cytometry

  Python

  •5•5•5•0•Updated Sep 23, 2021Sep 23, 2021

• spark-scRNASeq-Analysis

  Public
  use spark to improve scRNASeq analysis

  C

  •1•2•0•0•Updated Aug 7, 2021Aug 7, 2021

• YuLab_Tutorial

  Public
  YuLab Linux与生物信息基础培训

  1•3•0•0•Updated Jul 21, 2021Jul 21, 2021

• MOLI

  Public
  MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction *** This is NOT the original repo for MOLI. This is a forked repo. ***

  Jupyter Notebook

  •26•0•0•0•Updated Jun 9, 2021Jun 9, 2021

• ImmuneCellsSig_Comment

  Public
  Jupyter Notebook

  •1•1•0•0•Updated Apr 19, 2021Apr 19, 2021

• Diamond

  Public
  A Multi-modal DIA Mass Spectrometry Data Processing Pipeline

  Java

  •4•5•0•0•Updated Mar 16, 2021Mar 16, 2021

• hedgehog-lab

  Public
  Run, compile and execute JavaScript for Scientific Computing and Data Visualization TOTALLY TOTALLY TOTALLY in your BROWSER! An open source scientific computing environment for JavaScript TOTALLY in your browser, matrix operations with GPU acceleration, TeX support, data visualization and symbolic computation.

  TypeScript

  •

  Apache License 2.0

  •141•0•0•0•Updated Feb 9, 2021Feb 9, 2021

• COVID-19_FDA_App-a-thon

  Public
  Python

  •

  MIT License

  •0•2•0•0•Updated Jan 30, 2021Jan 30, 2021

• scRNAseq_pipelines

  Public
  Nextflow

  •6•12•0•0•Updated Oct 31, 2020Oct 31, 2020

• Snipe

  Public
  Highly sensitive pathogen detection

  Python

  •

  MIT License

  •5•11•3•0•Updated Oct 5, 2020Oct 5, 2020

• covid19

  Public
  🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.

  MIT License

  •3•0•0•0•Updated Sep 22, 2020Sep 22, 2020

• metageopred

  Public
  A Machine Learning Framework to Determine Geolocations from Metagenomics Profiling

  Jupyter Notebook

  •0•5•0•0•Updated Sep 9, 2020Sep 9, 2020

• pmbio.org

  Public
  Website for the precision medicine workshop

  CSS

  •

  MIT License

  •22•0•0•0•Updated Aug 8, 2020Aug 8, 2020