Upin xclim, package health

.binder/environment.yml

@@ -2,24 +2,23 @@ name: climpred-docs-notebooks
 channels:
   - conda-forge
 dependencies:
-  - python>=3.9
-  - xarray>=0.19.0
-  - dask-core>=2021.10.0
-  - cftime>=1.5.0
-  - xskillscore>=0.0.20
-  - cf_xarray>=0.6.0
-  - xesmf
+  - python >=3.9
+  - bias_correction >=0.4
+  - cf_xarray >=0.6.0
+  - cftime >=1.5.0
+  - dask-core >=2021.10.0
   - esmpy
-  - pydap
+  - esmtools >=1.1.3
   - matplotlib-base
-  - nc-time-axis>=1.4.0
+  - nc-time-axis >=1.4.0
   - netcdf4  # ==1.5.1  # see https://github.com/pydata/xarray/issues/4925
+  - pydap
   - toolz
+  - xarray >=0.19.0
+  - xclim !=0.30.0
+  - xesmf
   - xrft
-  - esmtools>=1.1.3
-  - xclim!=0.30.0
-  - bias_correction>=0.4
+  - xskillscore >=0.0.20
   - pip
   - pip:
     - git+https://github.com/pangeo-data/climpred.git  # latest climpred version
-    - nb_black

.github/workflows/climpred_installs.yml

@@ -16,7 +16,7 @@ jobs:
     outputs:
       triggered: ${{ steps.detect-trigger.outputs.trigger-found }}
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 2
       - uses: xarray-contrib/[email protected]
@@ -34,8 +34,8 @@ jobs:
       matrix:
         os: ["ubuntu-latest", "macos-latest", "windows-latest"]
     steps:
-    - uses: actions/checkout@v3
-    - name: Setup python
+    - uses: actions/checkout@v4
+    - name: Setup Python
       uses: actions/setup-python@v4
       with:
         python-version: 3.9
@@ -54,10 +54,10 @@ jobs:
       matrix:
         os: ["ubuntu-latest", "macos-latest", "windows-latest"]
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
-            fetch-depth: 0 # Fetch all history for all branches and tags.
-    - name: Setup python
+        fetch-depth: 0 # Fetch all history for all branches and tags.
+    - name: Setup Python
       uses: actions/setup-python@v4
       with:
         python-version: 3.9

.github/workflows/climpred_testing.yml

@@ -18,7 +18,7 @@ jobs:
     outputs:
       triggered: ${{ steps.detect-trigger.outputs.trigger-found }}
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 2
       - uses: xarray-contrib/[email protected]
@@ -27,40 +27,45 @@ jobs:
           keyword: "[skip-ci]"
 
   minimum-test:  # Runs testing suite with minimal dependencies
-    name: Test minimum dependencies, python 3.9
+    name: Test minimum dependencies, Python3.9
     runs-on: ubuntu-latest
     needs: detect-ci-trigger
     if: needs.detect-ci-trigger.outputs.triggered == 'false'
     defaults:
         run:
           shell: bash -l {0}
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
             fetch-depth: 0 # Fetch all history for all branches and tags.
-      - name: Set up conda
-        uses: conda-incubator/setup-miniconda@v2
+      - name: Set up conda (micromamba)
+        uses: mamba-org/setup-micromamba@v1
         with:
-          auto-update-conda: false
-          channels: conda-forge
-          miniforge-variant: Mambaforge
-          activate-environment: climpred-minimum-tests
-          python-version: 3.9
-      - name: Set up conda environment
-        run: |
-          mamba env update -f ci/requirements/minimum-tests.yml
+          environment-file: ci/requirements/minimum-tests.yml
+          environment-name: climpred-minimum-tests
+          cache-environment: true
+          create-args: >-
+            python=3.9
+            conda
+      - name: Install climpred
+        run: |
+          python -m pip install -e .
+          python -m pip uninstall netcdf4 -y
       - name: Conda info
-        run: conda info
+        run: |
+          conda info
       - name: Conda list
-        run: conda list
+        run: |
+          conda list
       - name: Cache datasets  # pytest-xdist fails otherwise
         run: |
           python -c "import climpred; climpred.tutorial._cache_all()"
       - name: Run tests
-        run: pytest -n 4 --durations=20
+        run: |
+          pytest -n 4 --durations=20
 
   maximum-test:  # Runs testing suite with all optional dependencies
-    name: Test optional dependencies, python ${{ matrix.python-version }}
+    name: Test optional dependencies, Python${{ matrix.python-version }}
     runs-on: ubuntu-latest
     needs: detect-ci-trigger
     if: needs.detect-ci-trigger.outputs.triggered == 'false'
@@ -70,7 +75,6 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        # python-version: [ "3.9", "3.10"]
         env: [""]
         include:
           - env: "climpred-maximum-tests"
@@ -79,11 +83,14 @@ jobs:
           - env: "climpred-maximum-tests"
             python-version: "3.10"
             os: ubuntu-latest
+          - env: "climpred-maximum-tests-upstream"
+            python-version: "3.11"
+            os: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
             fetch-depth: 0 # Fetch all history for all branches and tags.
-      - name: Setup micromamba
+      - name: Setup conda (micromamba)
         uses: mamba-org/setup-micromamba@v1
         with:
           environment-file: ci/requirements/maximum-tests.yml
@@ -93,18 +100,26 @@ jobs:
           create-args: >-
             python=${{matrix.python-version}}
             conda
+      - name: Install climpred[complete]
+        run: |
+          python -m pip install -e .[complete]
+          python -m pip uninstall netcdf4 -y
+      - name: Install bleeding edge
+        if: matrix.env == 'climpred-maximum-tests-upstream'
+        run: |
+          python -m pip install -r requirements_upstream.txt
       - name: Conda info
-        run: conda info
+        run: |
+          conda info
       - name: Conda list
-        run: conda list
-      - name: install
         run: |
-           python -m pip install -e .[complete]
-           conda list xclim
+          conda list
       - name: Cache datasets  # pytest-xdist fails otherwise
-        run: python -c "import climpred; climpred.tutorial._cache_all()"
+        run: |
+          python -c "import climpred; climpred.tutorial._cache_all()"
       - name: Run tests
-        run: pytest -n 4 --durations=20 --cov=climpred --cov-report=xml
+        run: |
+          pytest -n 4 --durations=20 --cov=climpred --cov-report=xml
       - name: Upload coverage to codecov
         uses: codecov/codecov-action@v3
         with:
@@ -113,56 +128,61 @@ jobs:
           fail_ci_if_error: false
 
   doctest:  # tests all docstrings
-    name: Doctests
+    name: Doctests, Python3.9
     runs-on: "ubuntu-latest"
     defaults:
       run:
         shell: bash -l {0}
     steps:
       - uses: actions/checkout@v3
-      - uses: conda-incubator/setup-miniconda@v2
+      - name: Setup conda (micromamba)
+        uses: mamba-org/setup-micromamba@v1
         with:
-          channels: conda-forge
-          miniforge-variant: Mambaforge
-          activate-environment: climpred-maximum-tests
-          auto-update-conda: false
-          python-version: 3.9
-      - name: Install conda dependencies
-        run: |
-          mamba env update -f ci/requirements/maximum-tests.yml
-      - name: Install climpred
+          environment-file: ci/requirements/maximum-tests.yml
+          environment-name: climpred-maximum-tests
+          cache-environment: true
+          create-args: >-
+            python=3.9
+            conda
+      - name: Install climpred[complete]
         run: |
           python -m pip install -e .[complete]
       - name: Conda info
-        run: conda info
+        run: |
+          conda info
       - name: Conda list
-        run: conda list
+        run: |
+          conda list
       - name: Run doctests
         run: |
           python -m pytest --doctest-modules climpred --ignore climpred/tests
 
   notebooks:  # Checks that pre-compiled notebooks in docs still work.
+    name: Notebooks, Python3.9
     runs-on: ubuntu-latest
     defaults:
         run:
           shell: bash -l {0}
     steps:
-      - uses: actions/checkout@v3
-      - name: Set up Conda
-        uses: conda-incubator/setup-miniconda@v2
+      - uses: actions/checkout@v4
+      - name: Set up conda (micromamba)
+        uses: mamba-org/setup-micromamba@v1
         with:
-          auto-update-conda: false
-          channels: conda-forge
-          miniforge-variant: Mambaforge
-          activate-environment: climpred-docs
-          python-version: 3.9
-      - name: Set up conda environment
-        run: |
-          mamba env update -f ci/requirements/docs.yml
+          environment-file: ci/requirements/docs.yml
+          environment-name: climpred-docs
+          cache-environment: true
+          create-args: >-
+            python=3.9
+            conda
+      - name: Install climpred
+        run: |
+          python -m pip install -e .
       - name: Conda info
-        run: conda info
+        run: |
+          conda info
       - name: Conda list
-        run: conda list
+        run: |
+          conda list
       - name: Test notebooks in docs
         run: |
           pushd docs

.github/workflows/upstream-dev-ci.yml

@@ -19,7 +19,7 @@ jobs:
     outputs:
       triggered: ${{ steps.detect-trigger.outputs.trigger-found }}
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 2
       - uses: xarray-contrib/[email protected]
@@ -48,27 +48,29 @@ jobs:
     outputs:
       artifacts_availability: ${{ steps.status.outputs.ARTIFACTS_AVAILABLE }}
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0 # Fetch all history for all branches and tags.
-      - name: Set up conda environment
-        uses: mamba-org/provision-with-micromamba@f347426e5745fe3dfc13ec5baf20496990d0281f
+      - name: Set up conda (micromamba)
+        uses: mamba-org/setup-micromamba@v1
         with:
           environment-file: ci/requirements/climpred-dev.yml
           environment-name: climpred-dev
-          extra-specs: |
+          cache-environment: true
+          create-args: >-
             python=${{ matrix.python-version }}
             pytest-reportlog
+            conda
       - name: Set up conda environment
         run: |
           bash ci/install-upstream-wheels.sh
-      - name: Install climpred
+      - name: Install climpred (no deps)
         run: |
           python -m pip install --no-deps -e .
-      - name: Version info
-        run: |
-          conda info -a
-          conda list
+      - name: Conda info
+        run: conda info -a
+      - name: Conda list
+        run: conda list
       - name: import climpred
         run: |
           python -c 'import climpred; climpred.show_versions()'