fix: Set posfilter files to no longer load when --from-cache set

src/gnatss/ops/data.py

@@ -231,6 +231,37 @@ def get_data_inputs(all_observations: pd.DataFrame) -> NumbaList:
     return data_inputs
 
 
+def prefilter_replies(
+    all_observations: pd.DataFrame,
+    num_transponders: int,
+) -> pd.DataFrame:
+    """
+    Remove pings that do receive replies from each
+    transponder in the array.
+
+    Parameters
+    ----------
+    all_observations : pd.DataFrame
+        The original observations that include every ping and reply
+    num_transponders : int
+        The number of transponders in the array
+
+    Returns
+    -------
+    pd.DataFrame
+        The observations where the number of replies equal the
+        number of transponders
+    """
+    # Get value counts for transmit times
+    time_counts = all_observations[constants.DATA_SPEC.tx_time].value_counts()
+
+    return all_observations[
+        all_observations[constants.DATA_SPEC.tx_time].isin(
+            time_counts[time_counts == num_transponders].index
+        )
+    ]
+
+
 def clean_tt(
     travel_times: pd.DataFrame,
     transponder_ids: list[str],

src/gnatss/ops/io.py

@@ -213,8 +213,8 @@ def load_datasets(
     # Gather main
     all_files_dict.update(gather_files(config, proc="main", mode=mode))
 
-    # Gather posfilter
-    if not skip_posfilter:
+    # Gather posfilter (Skip if from_cache set)
+    if not skip_posfilter and not from_cache:
         all_files_dict.update(gather_files(config, proc="posfilter", mode=mode))
 
     # Gather solver

src/gnatss/solver/utilities.py

@@ -12,7 +12,7 @@
 from .. import constants
 from ..configs.main import Configuration
 from ..configs.solver import SolverTransponder
-from ..ops.data import filter_tt, get_data_inputs
+from ..ops.data import filter_tt, get_data_inputs, prefilter_replies
 from ..ops.validate import check_solutions
 from ..utilities.geo import _get_rotation_matrix
 from ..utilities.time import AstroTime
@@ -387,15 +387,19 @@ def prepare_and_solve(
     # Store original xyz
     original_positions = transponders_xyz.copy()
 
+    # Store number of transponders
+    num_transponders = len(transponders)
+
     typer.echo("Preparing data inputs...")
-    data_inputs = get_data_inputs(all_observations)
+    typer.echo(f"Pre-filtering data with fewer than {num_transponders} replies...")
+    reduced_observations = prefilter_replies(all_observations, num_transponders)
+    data_inputs = get_data_inputs(reduced_observations)
 
     typer.echo("Perform solve...")
     is_converged = False
     n_iter = 0
-    num_transponders = len(transponders)
     process_dict = {}
-    num_data = len(all_observations)
+    num_data = len(reduced_observations)
     typer.echo(f"--- {len(data_inputs)} epochs, {num_data} measurements ---")
     while not is_converged:
         # Max converge attempt failure