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Manning Lab

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  1. vcfToGds vcfToGds Public

    Convert Vcf files to Gds format

    WDL 4 4

  2. metal metal Public

    WDL wrapper and docker image for running Metal meta-analysis software.

    R 3

  3. polygenic-risk-scores-pipeline polygenic-risk-scores-pipeline Public

    Pipeline to calculate polygenic risk scores from VCF files

    Shell 3

  4. singleVariantAssociation singleVariantAssociation Public

    Single variant association workflow (mixed models in GENESIS)

    R 2

  5. fetch-dbgap-data-workflow fetch-dbgap-data-workflow Public

    WDL 2 1

  6. topmed-t2d-wg-trait-harmonization topmed-t2d-wg-trait-harmonization Public

    repo for all trait harmonization related files in topmed t2d/glycemic traits

    HTML 1 1

Repositories

Showing 10 of 31 repositories
  • pprs-pipeline Public

    Paritioned Polygenic Risk Scores pipeline: essentially a wrapper around `plink --score` which automatically finds proxies for missing variants using LDlinkR.

    manning-lab/pprs-pipeline’s past year of commit activity
    R 0 0 0 0 Updated Jan 15, 2025
  • primed_consortia_legacy_project_phenotypes Public

    Code to create lists of EMR codes for Biobanks to use in the NHGRI's PRIMED Consortium Legacy Project

    manning-lab/primed_consortia_legacy_project_phenotypes’s past year of commit activity
    HTML 0 0 0 0 Updated Jan 6, 2025
  • polygenic-risk-scores-pipeline Public

    Pipeline to calculate polygenic risk scores from VCF files

    manning-lab/polygenic-risk-scores-pipeline’s past year of commit activity
    Shell 3 0 1 0 Updated Nov 25, 2024
  • metabolomics-qc Public
    manning-lab/metabolomics-qc’s past year of commit activity
    R 0 0 0 0 Updated Nov 11, 2024
  • primed_consortia_legacy_benchmarking_project Public
    manning-lab/primed_consortia_legacy_benchmarking_project’s past year of commit activity
    0 0 0 0 Updated Oct 3, 2024
  • fetch-dbgap-data-workflow Public
    manning-lab/fetch-dbgap-data-workflow’s past year of commit activity
    WDL 2 1 0 0 Updated Sep 18, 2024
  • subset-gds Public

    Uses the uwgac/topmed-master docker images to uses SeqArray

    manning-lab/subset-gds’s past year of commit activity
    WDL 0 0 0 0 Updated Jul 6, 2022
  • topmed-t2d-wg-trait-harmonization Public

    repo for all trait harmonization related files in topmed t2d/glycemic traits

    manning-lab/topmed-t2d-wg-trait-harmonization’s past year of commit activity
    HTML 1 1 1 0 Updated Mar 25, 2022
  • subset-vcf-workflow Public
    manning-lab/subset-vcf-workflow’s past year of commit activity
    WDL 0 0 0 0 Updated Dec 1, 2021
  • regenie-workflow Public
    manning-lab/regenie-workflow’s past year of commit activity
    Common Workflow Language 0 0 0 0 Updated Nov 29, 2021
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